data_1XY1

_audit_conform.dict_name      mmcif_pdbx_vrpt.dic
_audit_conform.dict_version   0.066
_audit_conform.dict_location  https://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx_vrpt.dic
#
_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1XY1
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    1XY1
_pdbx_vrpt_summary.PDB_deposition_date         1987-06-05
_pdbx_vrpt_summary.PDB_revision_number         6
_pdbx_vrpt_summary.PDB_revision_date           2024-11-20
_pdbx_vrpt_summary.report_creation_date        2024-11-09:22:47
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  BETA-MERCAPTOPROPIONATE-OXYTOCIN  
2  water    water                             
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
C  2  
D  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  1.04  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   99.96  180529     ?     ?  
2  2  1   99.80    1019  1.02  1.06  
3  1  2  100.00  177936     ?     ?  
4  2  2  100.00    1780  1.00  1.08  
5  1  3  100.00  177891     ?     ?  
6  2  3  100.00    1781  1.00  1.08  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A  100.00  
4  6  3  A  1  1  A  100.00  
5  3  2  B  1  1  B  100.00  
6  4  2  B  1  1  B  100.00  
7  5  3  B  1  1  B  100.00  
8  6  3  B  1  1  B  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  1.45  1.40  63  85  
2  1  1  B  B  1.52  1.41  63  85  
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     0.00
_pdbx_vrpt_summary_geometry.num_H_reduce                   130
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 126
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     1.40
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                170
_pdbx_vrpt_summary_geometry.angles_RMSZ                    1.49
#
_pdbx_vrpt_summary_diffraction.exp_method           x-ray
_pdbx_vrpt_summary_diffraction.ordinal              1
_pdbx_vrpt_summary_diffraction.PDB_resolution_high  1.04
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
 1  1  1  A   1  MPT  A   1  A  ?     
 2  1  1  A   1  MPT  A   1  B  ?     
 3  1  1  A   2  TYR  A   2  .  ?     
 4  1  1  A   3  ILE  A   3  .  ?     
 5  1  1  A   4  GLN  A   4  .  ?     
 6  1  1  A   5  ASN  A   5  .  ?     
 7  1  1  A   6  CYS  A   6  .  ?     
 8  1  1  A   7  PRO  A   7  .  ?     
 9  1  1  A   8  LEU  A   8  .  ?     
10  1  1  A   9  GLY  A   9  .  ?     
11  1  1  A  10  NH2  A  10  .  ?     
12  1  1  B   1  MPT  B   1  A  ?     
13  1  1  B   1  MPT  B   1  B  ?     
14  1  1  B   2  TYR  B   2  .  ?     
15  1  1  B   3  ILE  B   3  .  ?     
16  1  1  B   4  GLN  B   4  .  ?     
17  1  1  B   5  ASN  B   5  .  ?     
18  1  1  B   6  CYS  B   6  .  ?     
19  1  1  B   7  PRO  B   7  .  ?     
20  1  1  B   8  LEU  B   8  .  ?     
21  1  1  B   9  GLY  B   9  .  ?     
22  1  1  B  10  NH2  B  10  .  ?     
23  1  2  C   .  HOH  A  11  .  ?     
24  1  2  C   .  HOH  A  12  .  ?     
25  1  2  C   .  HOH  A  13  .  ?     
26  1  2  C   .  HOH  A  14  .  ?     
27  1  2  C   .  HOH  A  15  .  ?     
28  1  2  C   .  HOH  A  16  .  ?     
29  1  2  D   .  HOH  B  11  .  ?     
30  1  2  D   .  HOH  B  12  .  ?     
31  1  2  D   .  HOH  B  13  .  ?     
32  1  2  D   .  HOH  B  14  .  ?     
33  1  2  D   .  HOH  B  15  .  ?     
34  1  2  D   .  HOH  B  16  .  ?     
35  1  2  D   .  HOH  B  17  .  ?     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  ?             ?       ?  ?         2     ?     ?     ?     ?  ?           
 2   2  ?             ?       ?  ?         2     ?     ?     ?     ?  ?           
 3   3  m-85     -132.5   167.1  Favored   9    13  1.18    18  1.34  molprobity  
 4   4  mm        -54.1   120.2  Allowed  11     8  0.98    11  0.67  molprobity  
 5   5  mm-40      57.7    24.1  Favored   8     9  1.75    12  1.36  molprobity  
 6   6  t30      -150.4    74.5  Allowed   6     8  1.43    11  1.62  molprobity  
 7   7  t        -145.1    98.3  Favored   4     6  1.92     9  1.52  molprobity  
 8   8  Cg_endo   -78.1    -7.7  Favored   7     8  1.28    11  1.41  molprobity  
 9   9  mt        -72.6   -40.6  Favored  11     8  1.48    11  1.08  molprobity  
10  10  ?         170.2  -177.8  Favored   3     3  0.49     2  4.19  molprobity  
11  12  ?             ?       ?  ?         2     ?     ?     ?     ?  ?           
12  13  ?             ?       ?  ?         2     ?     ?     ?     ?  ?           
13  14  m-85     -126.5   164.5  Favored   9    13  0.86    18  2.08  molprobity  
14  15  tt        -65.6   125.1  Favored  11     8  1.30    11  1.56  molprobity  
15  16  mm-40      56.5    28.7  Favored   8     9  1.81    12  1.26  molprobity  
16  17  t30      -157.9    65.2  Allowed   6     8  1.94    11  1.29  molprobity  
17  18  t        -127.8    97.6  Favored   4     6  1.54     9  1.34  molprobity  
18  19  Cg_endo   -72.9   -11.8  Favored   7     8  1.16    11  0.63  molprobity  
19  20  mt        -77.3   -32.8  Favored  11     8  1.38    11  1.47  molprobity  
20  21  ?        -176.0   167.8  Favored   3     3  0.79     2  2.27  molprobity  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "2022.3.0, CSD as543be (2022)"                                        Y  
3  percentiles  "20231227.v01 (using entries in the PDB archive December 27th 2023)"  Y  
##
