data_1WTS

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1WTS
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1WTS
_pdbx_vrpt_summary.PDB_deposition_date         1998-06-26
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-03-02
_pdbx_vrpt_summary.RNA_suiteness               0.42
_pdbx_vrpt_summary.report_creation_date        2022-02-22:14:49
_pdbx_vrpt_summary.attempted_validation_steps  mogul,molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "RNA (5'-R(*GP*GP*AP*CP*CP*2MGP*GP*MA6P*MA6P*GP*GP*UP*CP*C)-3')"
#
_pdbx_vrpt_asym.label_asym_id  A
_pdbx_vrpt_asym.entity_id      1
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  pdb    
2  nmr  x-ray  
#
_pdbx_vrpt_percentile_type.id    1
_pdbx_vrpt_percentile_type.type  RNAsuiteness_percent
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1  33.28  4643  ?     ?     
2  2  1  55.77   676  ?     ?     
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      2.68
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       1.47
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   260
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  402
#
_pdbx_vrpt_summary_geometry.ordinal                 1
_pdbx_vrpt_summary_geometry.clashscore_full_length  6.37
_pdbx_vrpt_summary_geometry.num_H_reduce            165
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ          260
_pdbx_vrpt_summary_geometry.bonds_RMSZ              1.47
_pdbx_vrpt_summary_geometry.num_angles_RMSZ         402
_pdbx_vrpt_summary_geometry.angles_RMSZ             2.68
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A   1  G    A   1  .  ?        2     ?     ?     ?     ?  
 2  1  1  A   2  G    A   2  .  ?        2     ?     ?     ?     ?  
 3  1  1  A   3  A    A   3  .  ?        2     ?     ?     ?     ?  
 4  1  1  A   4  C    A   4  .  ?        4     ?     ?     ?     ?  
 5  1  1  A   5  C    A   5  .  ?        5     ?     ?     ?     ?  
 6  1  1  A   6  2MG  A   6  .  ?        ?     ?     2     5     ?  
 7  1  1  A   7  G    A   7  .  ?        5     1     ?     ?     ?  
 8  1  1  A   8  MA6  A   8  .  ?        ?     ?     ?     3     1  
 9  1  1  A   9  MA6  A   9  .  ?        ?     3     1     6     2  
10  1  1  A  10  G    A  10  .  ?        4     ?     ?     ?     ?  
11  1  1  A  11  G    A  11  .  ?        5     1     ?     ?     ?  
12  1  1  A  12  U    A  12  .  ?        ?     1     ?     ?     ?  
13  1  1  A  13  C    A  13  .  ?        3     ?     ?     ?     ?  
14  1  1  A  14  C    A  14  .  ?        2     ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.RNA_pucker
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  0.00  NotAvailable       ?        12  23  1.59  37  2.09  molprobity  
 2   2  0.57  Rotameric          ?        11  26  1.51  41  2.47  molprobity  
 3   3  0.18  Rotameric          outlier  11  25  1.05  39  2.11  molprobity  
 4   4  0.13  Rotameric          ?        11  22  1.52  34  2.72  molprobity  
 5   5  0.43  Rotameric          ?        11  21  1.63  30  3.16  molprobity  
 6   6  0.67  Rotameric          ?        13  19  1.11  21  2.74  mogul       
 7   7  0.00  NonRotameric       ?        11  25  1.67  37  3.07  molprobity  
 8   8     ?  ?                  ?        15  19  0.90  18  1.28  mogul       
 9   9     ?  ?                  ?        15  19  0.90  18  1.64  mogul       
10  10  0.00  Triaged/NotBinned  ?        11  26  1.53  41  2.84  molprobity  
11  11  0.42  Rotameric          ?        11  26  1.53  41  2.78  molprobity  
12  12  0.45  Rotameric          ?        10  22  1.16  34  2.07  molprobity  
13  13  0.86  Rotameric          ?        11  22  1.46  34  2.74  molprobity  
14  14  0.53  Rotameric          ?        12  21  1.47  30  3.36  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1   7  C8   1  0.68  2.24  
2   9  H91  1  0.68  2.24  
3   9  N7   2  0.42  2.82  
4   9  C9   2  0.42  2.82  
5  11  C6   3  0.48  3.01  
6  12  C5   3  0.48  3.01  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
 1   1  N1     C2     N3     127.159  123.900  0.600   5.43  
 2   1  N3     C2     N2     115.969  119.900  0.700  -5.62  
 3   2  N1     C2     N3     127.985  123.900  0.600   6.81  
 4   2  N3     C2     N2     113.843  119.900  0.700  -8.65  
 5   3  "C3'"  "C2'"  "C1'"   96.780  101.500  0.800  -5.90  
 6   3  N1     C6     N6     115.382  118.600  0.600  -5.36  
 7   4  "C3'"  "C2'"  "C1'"   97.348  101.500  0.800  -5.19  
 8   4  C6     N1     C2     117.490  120.300  0.400  -7.03  
 9   4  N3     C4     C5     124.227  121.900  0.400   5.82  
10   4  "O4'"  "C1'"  N1     112.318  108.200  0.800   5.15  
11   5  C6     N1     C2     117.823  120.300  0.400  -6.19  
12   5  N3     C2     O2     117.661  121.900  0.700  -6.06  
13   5  N3     C4     C5     124.179  121.900  0.400   5.70  
14   5  N3     C4     N4     113.515  118.000  0.700  -6.41  
15   5  "O4'"  "C1'"  N1     113.525  108.200  0.800   6.66  
16   7  C5     C6     O6     131.619  128.600  0.600   5.03  
17   7  N1     C2     N3     127.618  123.900  0.600   6.20  
18   7  N1     C6     O6     115.511  119.900  0.600  -7.32  
19   7  N3     C2     N2     114.306  119.900  0.700  -7.99  
20   7  "O4'"  "C1'"  "C2'"  100.225  105.800  1.000  -5.58  
21  10  "C5'"  "C4'"  "O4'"  115.814  109.100  1.200   5.59  
22  10  N1     C2     N3     126.907  123.900  0.600   5.01  
23  10  N1     C6     O6     116.259  119.900  0.600  -6.07  
24  10  N3     C2     N2     114.692  119.900  0.700  -7.44  
25  11  "C3'"  "C2'"  "C1'"   96.273  101.500  0.800  -6.53  
26  11  C5     C6     O6     131.840  128.600  0.600   5.40  
27  11  N1     C2     N3     127.592  123.900  0.600   6.15  
28  11  N1     C6     O6     116.059  119.900  0.600  -6.40  
29  11  N3     C2     N2     116.145  119.900  0.700  -5.36  
30  13  "C3'"  "C2'"  "C1'"  105.685  101.500  0.800   5.23  
31  13  N3     C2     O2     117.966  121.900  0.700  -5.62  
32  13  N3     C4     C5     124.712  121.900  0.400   7.03  
33  14  N3     C4     C5     124.721  121.900  0.400   7.05  
34  14  "O4'"  "C1'"  N1     118.285  108.200  0.800  12.61  
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
1  6  C8  N7  1.30  1.34    73  0.02  -2.21  0.00  
2  6  C6  N1  1.39  1.33  1173  0.02   3.48  0.00  
3  9  C8  N7  1.30  1.34    73  0.02  -2.15  0.00  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
 1  6  C4     C5     C6     118.26  120.80    52  0.95  -2.65  0.99  
 2  6  C5     C6     N1     111.56  123.43    93  1.37  -8.68  8.38  
 3  6  C2     N1     C6     125.62  115.18    32  1.79   5.83  7.64  
 4  6  N2     C2     N3     120.73  116.96    45  0.96   3.93  1.73  
 5  6  C2     N3     C4     111.77  115.28    36  1.14  -3.09  0.88  
 6  8  "C3'"  "C2'"  "C1'"   97.34  100.98    21  1.51  -2.42  0.37  
 7  8  "O3'"  "C3'"  "C4'"  105.23  111.05  1443  2.89  -2.01  0.00  
 8  8  "O3'"  "C3'"  "C2'"  119.28  111.82  2473  3.23   2.31  0.03  
 9  9  C4     C5     N7     111.83  109.40    21  1.04   2.33  0.45  
10  9  "C5'"  "C4'"  "C3'"  122.97  115.18   341  3.75   2.08  0.11  
11  9  "O4'"  "C4'"  "C3'"   99.73  105.11  1233  1.98  -2.72  0.06  
12  9  N1     C6     N6     119.57  117.06    33  1.05   2.39  0.33  
13  9  "C3'"  "C2'"  "C1'"   96.57  100.98    21  1.51  -2.93  1.14  
14  9  "O3'"  "C3'"  "C4'"  119.13  111.05  1443  2.89   2.79  0.25  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  8  "C4'"  "C5'"  "O5'"  P        19.60  136.85  448  18.94  63.99  0.00  
2  9  "O4'"  "C4'"  "C5'"  "O5'"  -126.42   60.09  451   9.11  11.73  0.00  
3  9  "C3'"  "C4'"  "C5'"  "O5'"    -5.88   63.73  451  41.05   3.07  0.44  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
