data_1VTI

loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB  1VTI    
NDB  DDF032  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    1VTI
_pdbx_vrpt_summary.PDB_deposition_date         1992-03-01
_pdbx_vrpt_summary.PDB_revision_number         2
_pdbx_vrpt_summary.PDB_revision_date           2023-12-27
_pdbx_vrpt_summary.report_creation_date        2024-06-12:01:16
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,mogul,buster-report,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "DNA (5'-D(*TP*GP*TP*AP*CP*A)-3')"  
2  non-polymer  DAUNOMYCIN  
3  water        water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  x-ray  
2  1.7  x-ray  
#
_pdbx_vrpt_percentile_type.id    1
_pdbx_vrpt_percentile_type.type  all_atom_clashscore
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1  1.28  141614     ?     ?  
2  2  1  0.13    4695  1.70  1.70  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      6.48
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       4.75
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   134
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  205
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       47.43
_pdbx_vrpt_summary_geometry.num_H_reduce     95
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   134
_pdbx_vrpt_summary_geometry.bonds_RMSZ       4.75
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  205
_pdbx_vrpt_summary_geometry.angles_RMSZ      6.48
#
_pdbx_vrpt_summary_diffraction.exp_method           x-ray
_pdbx_vrpt_summary_diffraction.ordinal              1
_pdbx_vrpt_summary_diffraction.PDB_resolution_high  1.70
_pdbx_vrpt_summary_diffraction.PDB_resolution_low   10.00
_pdbx_vrpt_summary_diffraction.PDB_R                0.26
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_chiral_outliers
_pdbx_vrpt_model_instance.count_plane_outliers
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A  1  DT   A   1  .  ?        5    15     ?     ?     ?     ?     ?     ?  
 2  1  1  A  2  DG   A   2  .  ?        7    13     6     ?     ?     ?     ?     ?  
 3  1  1  A  3  DA   A   3  .  ?        8    16     1     ?     ?     ?     ?     ?  
 4  1  1  A  4  DT   A   4  .  ?        5    14     3     ?     ?     ?     ?     ?  
 5  1  1  A  5  DC   A   5  .  ?        3    15     2     ?     1     ?     ?     ?  
 6  1  1  A  6  DA   A   6  .  ?        4    10     ?     ?     ?     ?     ?     ?  
 7  1  2  B  .  DM1  A   7  .  ?        ?     ?     6     1     ?    16    23     3  
 8  1  3  C  .  HOH  A   8  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
 9  1  3  C  .  HOH  A   9  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
10  1  3  C  .  HOH  A  10  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
11  1  3  C  .  HOH  A  11  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
12  1  3  C  .  HOH  A  12  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
13  1  3  C  .  HOH  A  13  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
14  1  3  C  .  HOH  A  14  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
15  1  3  C  .  HOH  A  15  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
16  1  3  C  .  HOH  A  16  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
17  1  3  C  .  HOH  A  17  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
18  1  3  C  .  HOH  A  18  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
19  1  3  C  .  HOH  A  19  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
20  1  3  C  .  HOH  A  20  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
21  1  3  C  .  HOH  A  21  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
22  1  3  C  .  HOH  A  22  .  ?        ?     ?     1     ?     ?     ?     ?     ?  
23  1  3  C  .  HOH  A  23  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
24  1  3  C  .  HOH  A  24  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
25  1  3  C  .  HOH  A  25  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
26  1  3  C  .  HOH  A  26  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
27  1  3  C  .  HOH  A  27  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
28  1  3  C  .  HOH  A  28  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
29  1  3  C  .  HOH  A  29  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
30  1  3  C  .  HOH  A  30  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
31  1  3  C  .  HOH  A  31  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
32  1  3  C  .  HOH  A  32  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
33  1  3  C  .  HOH  A  33  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
34  1  3  C  .  HOH  A  34  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
35  1  3  C  .  HOH  A  35  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
36  1  3  C  .  HOH  A  36  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
37  1  3  C  .  HOH  A  37  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
38  1  3  C  .  HOH  A  38  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
39  1  3  C  .  HOH  A  39  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
40  1  3  C  .  HOH  A  40  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
41  1  3  C  .  HOH  A  41  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
42  1  3  C  .  HOH  A  42  .  ?        ?     ?     1     ?     ?     ?     ?     ?  
43  1  3  C  .  HOH  A  43  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
44  1  3  C  .  HOH  A  44  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
45  1  3  C  .  HOH  A  45  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
46  1  3  C  .  HOH  A  46  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
47  1  3  C  .  HOH  A  47  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
48  1  3  C  .  HOH  A  48  .  ?        ?     ?     1     ?     ?     ?     ?     ?  
49  1  3  C  .  HOH  A  49  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
50  1  3  C  .  HOH  A  50  .  ?        ?     ?     3     ?     ?     ?     ?     ?  
51  1  3  C  .  HOH  A  51  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
52  1  3  C  .  HOH  A  52  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
53  1  3  C  .  HOH  A  53  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
54  1  3  C  .  HOH  A  54  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
55  1  3  C  .  HOH  A  55  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
56  1  3  C  .  HOH  A  56  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
57  1  3  C  .  HOH  A  57  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
58  1  3  C  .  HOH  A  58  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
59  1  3  C  .  HOH  A  59  .  ?        ?     ?     ?     ?     ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.ligand_chirality_outlier
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
1  1  13  ?     19  4.23  30  6.31  molprobity  
2  2   8  ?     25  4.75  39  6.96  molprobity  
3  3  11  ?     24  5.63  37  6.61  molprobity  
4  4  12  ?     22  3.94  34  5.55  molprobity  
5  5  11  ?     21  4.25  32  7.31  molprobity  
6  6  12  ?     23  5.28  33  5.89  molprobity  
7  7  28  Y     40  2.59  53  3.24  mogul       
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   2  "H3'"    1  0.81  1.79  
 2   2  "H3'"    2  0.51  2.10  
 3   2  "O5'"    3  0.64  1.98  
 4   2  "O5'"    4  0.48  2.58  
 5   2  "H2'"    3  0.64  1.98  
 6   2  "C2'"    4  0.48  2.58  
 7   3  "H2''"   5  0.42  2.54  
 8   4  "H2''"   6  0.49  2.43  
 9   4  "H2''"   7  0.47  1.97  
10   4  C6       5  0.42  2.54  
11   5  "C5'"    6  0.49  2.43  
12   5  "H5'"    7  0.47  1.97  
13   7  "O5'"    8  1.16  1.64  
14   7  "H5'"    9  0.72  1.89  
15   7  "H5'"   10  0.67  1.94  
16   7  "C5'"   11  0.68  2.25  
17   7  O17     12  0.42  2.37  
18   7  O19     12  0.42  2.37  
19  22  O        2  0.51  2.10  
20  42  O       10  0.67  1.94  
21  48  O        1  0.81  1.79  
22  50  O        8  1.16  1.64  
23  50  O        9  0.72  1.89  
24  50  O       11  0.68  2.25  
#
_pdbx_vrpt_instance_stereo_outliers.ordinal        1
_pdbx_vrpt_instance_stereo_outliers.instance_id    7
_pdbx_vrpt_instance_stereo_outliers.label_atom_id  "C5'"
_pdbx_vrpt_instance_stereo_outliers.problem        "WRONG HAND"
#
_pdbx_vrpt_instance_intra_plane_outliers.ordinal      1
_pdbx_vrpt_instance_intra_plane_outliers.instance_id  5
_pdbx_vrpt_instance_intra_plane_outliers.type         sidechain
_pdbx_vrpt_instance_intra_plane_outliers.plane_rmsd   0.06
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
 1  1  C2     N3     1.326  1.373  0.008   -5.89  
 2  1  C4     C5     1.388  1.445  0.009   -6.30  
 3  1  C4     O4     1.334  1.228  0.009   11.81  
 4  1  "C4'"  "O4'"  1.390  1.446  0.010   -5.61  
 5  1  N1     C2     1.336  1.376  0.008   -5.02  
 6  2  "C2'"  "C1'"  1.584  1.519  0.010    6.47  
 7  2  C2     N2     1.283  1.341  0.010   -5.77  
 8  2  "C3'"  "C2'"  1.598  1.518  0.012    6.63  
 9  2  "C3'"  "O3'"  1.361  1.435  0.013   -5.68  
10  2  C6     O6     1.298  1.237  0.009    6.76  
11  2  C8     N7     1.346  1.305  0.006    6.88  
12  2  N1     C2     1.276  1.373  0.008  -12.10  
13  3  "C4'"  "O4'"  1.376  1.446  0.010   -6.98  
14  3  C6     N1     1.409  1.351  0.007    8.25  
15  3  C6     N6     1.397  1.335  0.008    7.76  
16  3  C8     N7     1.255  1.311  0.007   -8.05  
17  3  N1     C2     1.259  1.339  0.009   -8.84  
18  3  N3     C4     1.436  1.344  0.006   15.38  
19  3  N7     C5     1.332  1.388  0.006   -9.40  
20  3  N9     C8     1.421  1.373  0.008    5.97  
21  4  "C2'"  "C1'"  1.449  1.518  0.010   -6.93  
22  4  C2     N3     1.324  1.373  0.008   -6.12  
23  4  "C4'"  "O4'"  1.337  1.446  0.010  -10.90  
24  4  C5     C6     1.299  1.339  0.007   -5.67  
25  4  P      OP1    1.585  1.485  0.017    5.90  
26  5  C2     N3     1.415  1.353  0.008    7.69  
27  5  C4     C5     1.336  1.425  0.008  -11.16  
28  5  C4     N4     1.393  1.335  0.009    6.47  
29  6  C2     N3     1.419  1.331  0.009    9.75  
30  6  N1     C2     1.422  1.339  0.009    9.26  
31  6  N3     C4     1.412  1.344  0.006   11.40  
32  6  N7     C5     1.469  1.388  0.006   13.47  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.link
 1  1  "O3'"  P      "O5'"  116.829  104.000  1.900    6.75  Y     
 2  1  OP1    P      "O3'"   84.215  105.200  2.200   -9.54  Y     
 3  1  C2     N3     C4     123.238  127.200  0.600   -6.60  ?     
 4  1  "C3'"  "C2'"  "C1'"   96.245  102.500  1.200   -5.21  ?     
 5  1  C4     C5     C6     114.430  118.000  0.600   -5.95  ?     
 6  1  C4     C5     C7     123.857  119.000  0.600    8.09  ?     
 7  1  C5     C4     O4     116.011  124.900  0.700  -12.70  ?     
 8  1  "C5'"  "C4'"  "O4'"  121.294  109.300  1.900    6.31  ?     
 9  1  C5     C6     N1     119.722  123.700  0.600   -6.63  ?     
10  1  C6     N1     "C1'"  112.236  120.400  1.500   -5.44  ?     
11  1  C6     N1     C2     128.706  121.300  0.500   14.81  ?     
12  1  N1     "C1'"  "C2'"   98.481  112.600  1.900   -7.43  ?     
13  1  N1     C2     N3     111.011  114.600  0.600   -5.98  ?     
14  1  N3     C4     C5     122.781  115.200  0.600   12.64  ?     
15  1  "O4'"  "C1'"  "C2'"  100.680  105.900  0.800   -6.53  ?     
16  2  P      "O3'"  "C3'"  132.185  119.700  1.200   10.40  Y     
17  2  "C4'"  "C3'"  "C2'"   97.166  103.100  0.900   -6.59  ?     
18  2  C4     C5     C6     124.221  118.800  0.600    9.04  ?     
19  2  C5     C6     N1     106.584  111.500  0.500   -9.83  ?     
20  2  C6     C5     N7     125.743  130.400  0.600   -7.76  ?     
21  2  C6     N1     C2     129.563  125.100  0.600    7.44  ?     
22  2  C8     N9     C4     102.516  106.400  0.400   -9.71  ?     
23  2  N1     C6     O6     124.418  119.900  0.600    7.53  ?     
24  2  N3     C4     C5     124.646  128.600  0.500   -7.91  ?     
25  2  N9     C4     C5     110.127  105.400  0.400   11.82  ?     
26  2  "O4'"  "C1'"  "C2'"   95.599  105.900  0.800  -12.88  ?     
27  2  "O4'"  "C1'"  N9     125.305  108.000  0.700   24.72  ?     
28  2  "O5'"  P      OP2    123.720  110.700  1.200   10.85  ?     
29  3  "O3'"  P      "O5'"  123.116  104.000  1.900   10.06  Y     
30  3  OP2    P      "O3'"   93.381  105.200  2.200   -5.37  Y     
31  3  P      "O3'"  "C3'"  144.259  119.700  1.200   20.47  Y     
32  3  "C1'"  "O4'"  "C4'"  116.967  110.100  1.000    6.87  ?     
33  3  C2     N3     C4     105.568  110.600  0.500  -10.06  ?     
34  3  "C4'"  "C3'"  "C2'"   98.272  103.100  0.900   -5.37  ?     
35  3  C4     N9     "C1'"  135.928  126.300  1.800    5.35  ?     
36  3  C5     C6     N6     118.765  123.700  0.800   -6.17  ?     
37  3  C5     N7     C8     107.022  103.900  0.500    6.24  ?     
38  3  C8     N9     C4     102.363  105.800  0.400   -8.59  ?     
39  3  N1     C2     N3     131.894  129.300  0.500    5.19  ?     
40  3  N1     C6     N6     125.524  118.600  0.600   11.54  ?     
41  3  "O4'"  "C1'"  "C2'"   97.902  105.900  0.800  -10.00  ?     
42  3  "O4'"  "C1'"  N9     117.650  108.000  0.700   13.79  ?     
43  3  OP1    P      OP2    111.375  119.600  1.500   -5.48  ?     
44  3  P      "O5'"  "C5'"  111.929  120.900  1.600   -5.61  ?     
45  4  C2     N3     C4     122.856  127.200  0.600   -7.24  ?     
46  4  "C3'"  "C2'"  "C1'"   94.050  102.500  1.200   -7.04  ?     
47  4  "C4'"  "C3'"  "C2'"  114.866  103.100  0.900   13.07  ?     
48  4  C4     C5     C7     114.945  119.000  0.600   -6.76  ?     
49  4  "C5'"  "C4'"  "C3'"  123.251  114.100  1.800    5.08  ?     
50  4  C5     C6     N1     120.650  123.700  0.600   -5.08  ?     
51  4  N1     "C1'"  "C2'"  122.371  112.600  1.900    5.14  ?     
52  4  N1     C2     N3     118.147  114.600  0.600    5.91  ?     
53  4  "O4'"  "C1'"  "C2'"  111.560  105.900  0.800    7.08  ?     
54  4  "O4'"  "C4'"  "C3'"  101.224  106.000  0.600   -7.96  ?     
55  4  "O5'"  "C5'"  "C4'"   95.634  111.000  2.500   -6.15  ?     
56  4  "O5'"  P      OP1     94.014  105.700  0.900  -12.98  ?     
57  4  "O5'"  P      OP2    120.254  110.700  1.200    7.96  ?     
58  4  P      "O5'"  "C5'"  109.125  120.900  1.600   -7.36  ?     
59  5  "O3'"  P      "O5'"  123.204  104.000  1.900   10.11  Y     
60  5  P      "O3'"  "C3'"  134.703  119.700  1.200   12.50  Y     
61  5  C4     C5     C6     121.005  117.400  0.500    7.21  ?     
62  5  "C5'"  "C4'"  "C3'"  123.954  114.100  1.800    5.47  ?     
63  5  C5     C6     N1     125.174  121.000  0.500    8.35  ?     
64  5  C6     N1     "C1'"  128.906  120.800  1.200    6.75  ?     
65  5  C6     N1     C2     113.850  120.300  0.400  -16.12  ?     
66  5  N1     C2     O2     114.062  118.900  0.600   -8.06  ?     
67  5  N3     C4     C5     117.980  121.900  0.400   -9.80  ?     
68  5  N3     C4     N4     122.601  118.000  0.700    6.57  ?     
69  5  "O4'"  "C1'"  N1     121.805  108.000  0.700   19.72  ?     
70  5  "O4'"  "C4'"  "C3'"  111.418  106.000  0.600    9.03  ?     
71  5  "O5'"  P      OP1    118.002  110.700  1.200    6.08  ?     
72  5  "O5'"  P      OP2    118.711  110.700  1.200    6.68  ?     
73  5  OP1    P      OP2    102.459  119.600  1.500  -11.43  ?     
74  6  C2     N3     C4     106.098  110.600  0.500   -9.00  ?     
75  6  "C3'"  "C2'"  "C1'"   92.870  102.500  1.200   -8.03  ?     
76  6  "C5'"  "C4'"  "O4'"  127.051  109.300  1.900    9.34  ?     
77  6  C5     N7     C8      96.242  103.900  0.500  -15.32  ?     
78  6  C8     N9     C4     103.002  105.800  0.400   -7.00  ?     
79  6  N3     C4     C5     130.987  126.800  0.700    5.98  ?     
80  6  N3     C4     N9     122.165  127.400  0.800   -6.54  ?     
81  6  N7     C8     N9     121.070  113.800  0.500   14.54  ?     
82  6  "O4'"  "C4'"  "C3'"   99.412  106.000  0.600  -10.98  ?     
83  6  OP1    P      OP2    108.821  119.600  1.500   -7.19  ?     
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
 1  7  C2     C3     1.33  1.38  50000  0.02  -3.22  0.00  
 2  7  O4     C4     1.32  1.37  13580  0.02  -3.18  0.00  
 3  7  C5     C6     1.56  1.47   2271  0.02   3.75  0.00  
 4  7  C20    C5     1.37  1.41   3195  0.01  -2.83  0.00  
 5  7  C18    C7     1.34  1.41   2374  0.02  -2.67  0.00  
 6  7  O8     C8     1.44  1.36  11471  0.02   3.23  0.00  
 7  7  C9     C10    1.59  1.51    120  0.02   4.82  0.01  
 8  7  O10    C10    1.36  1.44     36  0.02  -4.67  0.03  
 9  7  C11    C10    1.58  1.52    204  0.02   3.61  0.00  
10  7  C11    C12    1.48  1.53     95  0.02  -2.73  0.01  
11  7  C17    C16    1.43  1.40   1757  0.01   2.41  0.00  
12  7  O19    C19    1.32  1.22   9580  0.02   5.62  0.00  
13  7  "O4'"  "C4'"  1.50  1.43  11316  0.02   2.89  0.00  
14  7  "C4'"  "C5'"  1.58  1.52    314  0.02   2.52  0.00  
15  7  "O5'"  "C5'"  1.27  1.44   1077  0.02  -7.28  0.07  
16  7  "C6'"  "C5'"  1.58  1.51   3046  0.02   2.81  0.00  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
 1  7  O4     C4     C3     120.66  124.30  11322  1.69   -2.16   0.00  
 2  7  O4     C4     C5     119.56  115.84   1949  1.42    2.63   0.02  
 3  7  C21    O4     C4     121.92  117.51  13580  1.47    3.01   0.01  
 4  7  C7     C6     C5     113.19  118.11    589  1.71   -2.87   0.04  
 5  7  O6     C6     C7     125.01  121.44   2271  1.67    2.14   0.03  
 6  7  C8     C7     C6     117.03  120.46    211  1.61   -2.12   0.06  
 7  7  C18    C7     C6     124.61  120.00    683  1.35    3.41   0.55  
 8  7  C11    C10    C9     104.70  110.71     48  2.35   -2.56   0.76  
 9  7  O12    C12    C11    120.16  109.40     83  2.27    4.73   6.47  
10  7  C15    C16    C17    110.95  119.22     31  1.83   -4.52   5.30  
11  7  C18    C17    C16    116.99  121.63    269  1.85   -2.51   0.11  
12  7  C7     C18    C17    123.56  119.65    242  1.44    2.72   0.03  
13  7  C17    C18    C19    115.85  120.46    211  1.61   -2.86   0.23  
14  7  O10    "C1'"  "C2'"  121.03  108.28    178  1.92    6.63   6.28  
15  7  O10    "C1'"  "O5'"   88.13  109.97    360  3.23   -6.77   6.46  
16  7  "O5'"  "C1'"  "C2'"  115.10  110.84    310  1.55    2.75   0.09  
17  7  "C2'"  "C3'"  "C4'"  116.51  110.08    113  1.50    4.30   1.97  
18  7  "O4'"  "C4'"  "C3'"   98.07  109.90    221  1.87   -6.33   6.30  
19  7  "O4'"  "C4'"  "C5'"   84.24  109.74    314  2.21  -11.55  17.22  
20  7  "O5'"  "C5'"  "C4'"  124.54  109.55    310  1.80    8.33   5.12  
21  7  "C6'"  "C5'"  "C4'"  104.47  113.08    314  1.83   -4.71   0.58  
22  7  "O5'"  "C5'"  "C6'"  116.11  106.74   1077  2.22    4.23   1.06  
23  7  "C1'"  "O5'"  "C5'"  123.54  113.82    401  2.74    3.55   1.46  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  7  C3     C4     O4   C21    31.82  24.86  13572  8.48   0.02  2.98  
2  7  "C2'"  "C1'"  O10  C10   126.53  35.50    382  9.37  11.55  0.00  
3  7  "O5'"  "C1'"  O10  C10  -115.06  38.81    376  9.82   7.34  0.27  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "2022.3.0, CSD as543be (2022)"                                        Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
