data_1LEA

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1LEA
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1LEA
_pdbx_vrpt_summary.PDB_deposition_date         1994-05-11
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-02-23
_pdbx_vrpt_summary.report_creation_date        2022-08-21:11:35
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "LEXA REPRESSOR DNA BINDING DOMAIN"
#
_pdbx_vrpt_asym.label_asym_id  A
_pdbx_vrpt_asym.entity_id      1
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      1.62
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       1.64
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   567
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  760
#
_pdbx_vrpt_summary_geometry.ordinal                                    1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers_full_length  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers_full_length       8.62
_pdbx_vrpt_summary_geometry.clashscore_full_length                     0.00
_pdbx_vrpt_summary_geometry.num_H_reduce                               583
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                             567
_pdbx_vrpt_summary_geometry.bonds_RMSZ                                 1.64
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                            760
_pdbx_vrpt_summary_geometry.angles_RMSZ                                1.62
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
 1  1  1  A   1  MET  A   1  .  ?        ?     ?  
 2  1  1  A   2  LYS  A   2  .  ?        ?     ?  
 3  1  1  A   3  ALA  A   3  .  ?        ?     ?  
 4  1  1  A   4  LEU  A   4  .  ?        ?     ?  
 5  1  1  A   5  THR  A   5  .  ?        ?     ?  
 6  1  1  A   6  ALA  A   6  .  ?        ?     ?  
 7  1  1  A   7  ARG  A   7  .  ?        ?     2  
 8  1  1  A   8  GLN  A   8  .  ?        ?     ?  
 9  1  1  A   9  GLN  A   9  .  ?        ?     ?  
10  1  1  A  10  GLU  A  10  .  ?        1     ?  
11  1  1  A  11  VAL  A  11  .  ?        ?     ?  
12  1  1  A  12  PHE  A  12  .  ?        ?     ?  
13  1  1  A  13  ASP  A  13  .  ?        ?     2  
14  1  1  A  14  LEU  A  14  .  ?        ?     ?  
15  1  1  A  15  ILE  A  15  .  ?        ?     ?  
16  1  1  A  16  ARG  A  16  .  ?        ?     1  
17  1  1  A  17  ASP  A  17  .  ?        ?     2  
18  1  1  A  18  HIS  A  18  .  ?        ?     ?  
19  1  1  A  19  ILE  A  19  .  ?        ?     ?  
20  1  1  A  20  SER  A  20  .  ?        ?     ?  
21  1  1  A  21  GLN  A  21  .  ?        ?     ?  
22  1  1  A  22  THR  A  22  .  ?        ?     ?  
23  1  1  A  23  GLY  A  23  .  ?        ?     ?  
24  1  1  A  24  MET  A  24  .  ?        ?     ?  
25  1  1  A  25  PRO  A  25  .  ?        ?     ?  
26  1  1  A  26  PRO  A  26  .  ?        ?     ?  
27  1  1  A  27  THR  A  27  .  ?        ?     ?  
28  1  1  A  28  ARG  A  28  .  ?        ?     2  
29  1  1  A  29  ALA  A  29  .  ?        ?     ?  
30  1  1  A  30  GLU  A  30  .  ?        1     ?  
31  1  1  A  31  ILE  A  31  .  ?        ?     ?  
32  1  1  A  32  ALA  A  32  .  ?        ?     ?  
33  1  1  A  33  GLN  A  33  .  ?        ?     ?  
34  1  1  A  34  ARG  A  34  .  ?        ?     2  
35  1  1  A  35  LEU  A  35  .  ?        ?     ?  
36  1  1  A  36  GLY  A  36  .  ?        ?     ?  
37  1  1  A  37  PHE  A  37  .  ?        ?     ?  
38  1  1  A  38  ARG  A  38  .  ?        ?     2  
39  1  1  A  39  SER  A  39  .  ?        ?     ?  
40  1  1  A  40  PRO  A  40  .  ?        ?     ?  
41  1  1  A  41  ASN  A  41  .  ?        ?     ?  
42  1  1  A  42  ALA  A  42  .  ?        ?     ?  
43  1  1  A  43  ALA  A  43  .  ?        ?     ?  
44  1  1  A  44  GLU  A  44  .  ?        1     ?  
45  1  1  A  45  GLU  A  45  .  ?        1     ?  
46  1  1  A  46  HIS  A  46  .  ?        ?     ?  
47  1  1  A  47  LEU  A  47  .  ?        ?     ?  
48  1  1  A  48  LYS  A  48  .  ?        ?     ?  
49  1  1  A  49  ALA  A  49  .  ?        ?     ?  
50  1  1  A  50  LEU  A  50  .  ?        ?     ?  
51  1  1  A  51  ALA  A  51  .  ?        ?     ?  
52  1  1  A  52  ARG  A  52  .  ?        ?     2  
53  1  1  A  53  LYS  A  53  .  ?        ?     ?  
54  1  1  A  54  GLY  A  54  .  ?        ?     ?  
55  1  1  A  55  VAL  A  55  .  ?        ?     ?  
56  1  1  A  56  ILE  A  56  .  ?        ?     ?  
57  1  1  A  57  GLU  A  57  .  ?        1     ?  
58  1  1  A  58  ILE  A  58  .  ?        ?     ?  
59  1  1  A  59  VAL  A  59  .  ?        ?     ?  
60  1  1  A  60  SER  A  60  .  ?        ?     ?  
61  1  1  A  61  GLY  A  61  .  ?        ?     ?  
62  1  1  A  62  ALA  A  62  .  ?        ?     ?  
63  1  1  A  63  SER  A  63  .  ?        ?     ?  
64  1  1  A  64  ARG  A  64  .  ?        ?     2  
65  1  1  A  65  GLY  A  65  .  ?        ?     ?  
66  1  1  A  66  ILE  A  66  .  ?        ?     ?  
67  1  1  A  67  ARG  A  67  .  ?        ?     1  
68  1  1  A  68  LEU  A  68  .  ?        ?     ?  
69  1  1  A  69  LEU  A  69  .  ?        ?     ?  
70  1  1  A  70  GLN  A  70  .  ?        ?     ?  
71  1  1  A  71  GLU  A  71  .  ?        1     ?  
72  1  1  A  72  GLU  A  72  .  ?        1     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  OUTLIER       ?      ?  ?        11   8  0.79  10  1.15  molprobity  
 2   2  OUTLIER  -138.7   98.8  Favored  13   9  0.81  11  1.33  molprobity  
 3   3  ?         -83.1  133.8  Favored   5   5  0.90   7  1.34  molprobity  
 4   4  mt       -103.5  131.5  Favored  11   8  0.91  11  0.78  molprobity  
 5   5  p         -68.2  155.7  Favored   7   7  1.15  10  1.09  molprobity  
 6   6  ?         -50.0  -49.1  Favored   5   5  1.09   7  1.68  molprobity  
 7   7  tpt180    -75.0  -34.9  Favored  13  11  1.42  14  2.97  molprobity  
 8   8  pt20      -65.2  -39.6  Favored   8   9  0.99  12  1.23  molprobity  
 9   9  tp60      -57.4  -37.6  Favored   8   9  0.90  12  1.52  molprobity  
10  10  mt-10     -57.0  -45.8  Favored   6   9  3.54  12  1.38  molprobity  
11  11  t         -56.5  -49.6  Favored   9   7  1.39  10  1.33  molprobity  
12  12  t80       -56.7  -46.6  Favored   9  12  1.11  16  0.97  molprobity  
13  13  m-20      -58.4  -41.2  Favored   4   8  1.95  11  2.70  molprobity  
14  14  tp        -62.4  -37.6  Favored  11   8  1.12  11  0.77  molprobity  
15  15  mt        -58.9  -51.6  Favored  11   8  1.18  11  0.92  molprobity  
16  16  mtm180    -60.7  -44.2  Favored  13  11  1.44  14  2.66  molprobity  
17  17  t70       -60.4  -45.1  Favored   4   8  1.91  11  2.88  molprobity  
18  18  t60       -67.5  -36.9  Favored   7  11  1.57  15  1.98  molprobity  
19  19  mt        -62.0  -47.1  Favored  11   8  1.30  11  0.89  molprobity  
20  20  t         -62.6  -29.4  Favored   5   6  1.25   8  1.24  molprobity  
21  21  mt-30     -85.1  -46.4  Favored   8   9  1.00  12  0.79  molprobity  
22  22  p        -108.3  -18.9  Favored   7   7  1.23  10  1.50  molprobity  
23  23  ?          95.2  -45.8  Favored   3   4  1.44   5  0.77  molprobity  
24  24  ptp       -94.9  155.5  Favored   9   8  1.03  11  1.36  molprobity  
25  25  Cg_endo   -75.0  160.8  Favored   7   8  1.22  12  1.02  molprobity  
26  26  Cg_endo   -83.2  163.3  Favored   7   8  1.07  11  0.94  molprobity  
27  27  p         -74.2  156.8  Favored   7   7  1.10  10  1.24  molprobity  
28  28  OUTLIER   -58.9  -30.6  Favored  13  11  1.47  14  3.12  molprobity  
29  29  ?         -62.2  -47.0  Favored   5   5  1.05   7  1.43  molprobity  
30  30  mt-10     -55.7  -43.8  Favored   6   9  3.48  12  1.23  molprobity  
31  31  mt        -59.7  -48.0  Favored  11   8  1.20  11  0.86  molprobity  
32  32  ?         -62.5  -45.9  Favored   5   5  1.01   7  1.39  molprobity  
33  33  mt-30     -77.1  -48.5  Favored   8   9  0.91  12  0.90  molprobity  
34  34  mtm180    -72.1  -40.6  Favored  13  11  1.43  14  2.86  molprobity  
35  35  mt        -77.5  -16.5  Favored  11   8  1.11  11  1.04  molprobity  
36  36  ?          88.1   68.2  Allowed   3   4  1.07   5  0.65  molprobity  
37  37  m-85     -112.5  124.3  Favored   9  12  1.06  16  0.62  molprobity  
38  38  OUTLIER   -65.4  -37.2  Favored  13  11  1.51  14  2.87  molprobity  
39  39  m        -113.3  117.2  Favored   5   6  1.20   9  1.02  molprobity  
40  40  Cg_exo    -52.7  -25.9  Favored   7   8  1.21  11  1.03  molprobity  
41  41  m120      -59.6  -30.5  Favored   6   8  1.03  11  1.03  molprobity  
42  42  ?         -65.6  -42.5  Favored   5   5  1.13   7  1.35  molprobity  
43  43  ?         -57.0  -46.6  Favored   5   5  1.12   7  1.45  molprobity  
44  44  tt0       -57.5  -43.9  Favored   6   9  3.49  12  1.67  molprobity  
45  45  tt0       -62.2  -43.9  Favored   6   9  3.48  12  1.56  molprobity  
46  46  m-70      -62.9  -39.9  Favored   7  11  1.46  15  1.99  molprobity  
47  47  tp        -57.3  -47.3  Favored  11   8  0.98  11  1.04  molprobity  
48  48  mttt      -55.3  -48.0  Favored  13   9  0.96  11  0.82  molprobity  
49  49  ?         -55.3  -37.2  Favored   5   5  1.09   7  1.54  molprobity  
50  50  mt        -61.0  -49.3  Favored  11   8  1.06  11  0.90  molprobity  
51  51  ?         -61.9  -43.2  Favored   5   5  1.08   7  1.48  molprobity  
52  52  mtt180    -62.7  -38.8  Favored  13  11  1.42  14  2.96  molprobity  
53  53  mttt      -68.2  -38.8  Favored  13   9  1.10  11  0.77  molprobity  
54  54  ?         120.4   38.4  Allowed   3   4  1.40   5  0.96  molprobity  
55  55  m        -112.4  -18.8  Favored   9   7  1.22  10  1.56  molprobity  
56  56  pt       -142.4  152.4  Favored  11   8  1.19  11  0.72  molprobity  
57  57  tt0      -101.7  121.8  Favored   6   9  3.57  12  1.19  molprobity  
58  58  mt        -85.3  106.2  Favored  11   8  1.15  11  0.77  molprobity  
59  59  t         -79.5   92.8  Allowed   9   7  1.21  10  1.33  molprobity  
60  60  m         -80.8  101.4  Favored   5   6  1.07   8  0.98  molprobity  
61  61  ?         139.8  -53.2  Allowed   3   4  1.33   5  0.29  molprobity  
62  62  ?         -78.0  123.4  Favored   5   5  0.92   7  1.26  molprobity  
63  63  m         -60.3  -52.2  Favored   5   6  1.22   8  0.82  molprobity  
64  64  mtt180    -91.5   82.7  Favored  13  11  1.40  14  2.92  molprobity  
65  65  ?        -145.7   72.2  Allowed   3   4  1.10   5  0.43  molprobity  
66  66  mt       -136.1  102.6  Favored  11   8  1.08  11  0.96  molprobity  
67  67  mtm180    -85.7  128.9  Favored  13  11  1.35  14  2.57  molprobity  
68  68  tp        -80.4  120.8  Favored  11   8  0.91  11  1.01  molprobity  
69  69  mt       -112.6  -51.8  Favored  11   8  1.00  11  0.94  molprobity  
70  70  OUTLIER  -152.4  162.3  Favored   8   9  1.00  12  1.02  molprobity  
71  71  tt0      -145.2  -97.3  Allowed   6   9  3.57  12  1.67  molprobity  
72  72  mt-10         ?      ?  ?         6   8  3.80   9  1.65  molprobity  
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
1  10  CD  OE2  1.360  1.252  0.011   9.84  
2  30  CD  OE2  1.358  1.252  0.011   9.65  
3  44  CD  OE2  1.360  1.252  0.011   9.83  
4  45  CD  OE2  1.360  1.252  0.011   9.78  
5  57  CD  OE2  1.363  1.252  0.011  10.08  
6  71  CD  OE2  1.362  1.252  0.011  10.02  
7  72  CD  OE2  1.363  1.252  0.011  10.13  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
 1   7  NE  CZ  NH1  124.632  120.300  0.500   8.66  
 2   7  NE  CZ  NH2  117.697  120.300  0.500  -5.21  
 3  13  CB  CG  OD1  123.295  118.300  0.900   5.55  
 4  13  CB  CG  OD2  112.614  118.300  0.900  -6.32  
 5  16  NE  CZ  NH1  124.323  120.300  0.500   8.04  
 6  17  CB  CG  OD1  123.518  118.300  0.900   5.80  
 7  17  CB  CG  OD2  112.754  118.300  0.900  -6.16  
 8  28  NE  CZ  NH1  124.888  120.300  0.500   9.18  
 9  28  NE  CZ  NH2  117.498  120.300  0.500  -5.61  
10  34  NE  CZ  NH1  124.668  120.300  0.500   8.74  
11  34  NE  CZ  NH2  117.632  120.300  0.500  -5.34  
12  38  NE  CZ  NH1  124.510  120.300  0.500   8.42  
13  38  NE  CZ  NH2  117.499  120.300  0.500  -5.60  
14  52  NE  CZ  NH1  124.492  120.300  0.500   8.38  
15  52  NE  CZ  NH2  117.232  120.300  0.500  -6.13  
16  64  NE  CZ  NH1  124.487  120.300  0.500   8.37  
17  64  NE  CZ  NH2  117.155  120.300  0.500  -6.29  
18  67  NE  CZ  NH1  124.372  120.300  0.500   8.14  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
