data_1IKL

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1IKL
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1IKL
_pdbx_vrpt_summary.PDB_deposition_date         1995-08-03
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-02-23
_pdbx_vrpt_summary.report_creation_date        2022-08-21:11:28
_pdbx_vrpt_summary.attempted_validation_steps  mogul,molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "HUMAN INTERLEUKIN-8 (MONOMERIC)"
#
_pdbx_vrpt_asym.label_asym_id  A
_pdbx_vrpt_asym.entity_id      1
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.86
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       1.03
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   570
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  762
#
_pdbx_vrpt_summary_geometry.ordinal                                    1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers_full_length  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers_full_length       18.75
_pdbx_vrpt_summary_geometry.clashscore_full_length                     16.54
_pdbx_vrpt_summary_geometry.num_H_reduce                               580
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                             570
_pdbx_vrpt_summary_geometry.bonds_RMSZ                                 1.03
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                            762
_pdbx_vrpt_summary_geometry.angles_RMSZ                                0.86
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_plane_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A   4  GLU  A   4  .  ?        ?     ?     ?     ?  
 2  1  1  A   5  LEU  A   5  .  ?        ?     ?     ?     ?  
 3  1  1  A   6  ARG  A   6  .  ?        ?     1     ?     ?  
 4  1  1  A   7  CYS  A   7  .  ?        ?     ?     ?     ?  
 5  1  1  A   8  GLN  A   8  .  ?        ?     ?     ?     ?  
 6  1  1  A   9  CYS  A   9  .  ?        ?     ?     ?     ?  
 7  1  1  A  10  ILE  A  10  .  ?        ?     ?     ?     ?  
 8  1  1  A  11  LYS  A  11  .  ?        ?     ?     ?     ?  
 9  1  1  A  12  THR  A  12  .  ?        ?     ?     ?     ?  
10  1  1  A  13  TYR  A  13  .  ?        1     ?     ?     ?  
11  1  1  A  14  SER  A  14  .  ?        ?     ?     ?     ?  
12  1  1  A  15  LYS  A  15  .  ?        ?     ?     ?     ?  
13  1  1  A  16  PRO  A  16  .  ?        1     ?     ?     ?  
14  1  1  A  17  PHE  A  17  .  ?        1     ?     ?     ?  
15  1  1  A  18  HIS  A  18  .  ?        4     ?     ?     ?  
16  1  1  A  19  PRO  A  19  .  ?        1     ?     ?     ?  
17  1  1  A  20  LYS  A  20  .  ?        3     ?     ?     ?  
18  1  1  A  21  PHE  A  21  .  ?        1     ?     ?     ?  
19  1  1  A  22  ILE  A  22  .  ?        2     ?     ?     ?  
20  1  1  A  23  LYS  A  23  .  ?        ?     ?     ?     ?  
21  1  1  A  24  GLU  A  24  .  ?        ?     ?     ?     ?  
22  1  1  A  25  MLE  A  25  .  ?        4     ?     1     3  
23  1  1  A  26  ARG  A  26  .  ?        ?     1     ?     ?  
24  1  1  A  27  VAL  A  27  .  ?        1     ?     ?     ?  
25  1  1  A  28  ILE  A  28  .  ?        ?     ?     ?     ?  
26  1  1  A  29  GLU  A  29  .  ?        ?     ?     ?     ?  
27  1  1  A  30  SER  A  30  .  ?        ?     ?     ?     ?  
28  1  1  A  31  GLY  A  31  .  ?        ?     ?     ?     ?  
29  1  1  A  32  PRO  A  32  .  ?        ?     ?     ?     ?  
30  1  1  A  33  HIS  A  33  .  ?        ?     ?     ?     ?  
31  1  1  A  34  CYS  A  34  .  ?        ?     ?     ?     ?  
32  1  1  A  35  ALA  A  35  .  ?        ?     ?     ?     ?  
33  1  1  A  36  ASN  A  36  .  ?        ?     ?     ?     ?  
34  1  1  A  37  THR  A  37  .  ?        ?     ?     ?     ?  
35  1  1  A  38  GLU  A  38  .  ?        ?     ?     ?     ?  
36  1  1  A  39  ILE  A  39  .  ?        2     ?     ?     ?  
37  1  1  A  40  ILE  A  40  .  ?        ?     ?     ?     ?  
38  1  1  A  41  VAL  A  41  .  ?        3     ?     ?     ?  
39  1  1  A  42  LYS  A  42  .  ?        ?     ?     ?     ?  
40  1  1  A  43  LEU  A  43  .  ?        ?     ?     ?     ?  
41  1  1  A  44  SER  A  44  .  ?        ?     ?     ?     ?  
42  1  1  A  45  ASP  A  45  .  ?        ?     ?     ?     ?  
43  1  1  A  46  GLY  A  46  .  ?        ?     ?     ?     ?  
44  1  1  A  47  ARG  A  47  .  ?        ?     1     ?     ?  
45  1  1  A  48  GLU  A  48  .  ?        ?     ?     ?     ?  
46  1  1  A  49  LEU  A  49  .  ?        2     ?     ?     ?  
47  1  1  A  50  CYS  A  50  .  ?        ?     ?     ?     ?  
48  1  1  A  51  LEU  A  51  .  ?        3     ?     ?     ?  
49  1  1  A  52  ASP  A  52  .  ?        ?     ?     ?     ?  
50  1  1  A  53  PRO  A  53  .  ?        ?     ?     ?     ?  
51  1  1  A  54  LYS  A  54  .  ?        ?     ?     ?     ?  
52  1  1  A  55  GLU  A  55  .  ?        ?     ?     ?     ?  
53  1  1  A  56  ASN  A  56  .  ?        ?     ?     ?     ?  
54  1  1  A  57  TRP  A  57  .  ?        4     ?     ?     ?  
55  1  1  A  58  VAL  A  58  .  ?        5     ?     ?     ?  
56  1  1  A  59  GLN  A  59  .  ?        ?     ?     ?     ?  
57  1  1  A  60  ARG  A  60  .  ?        ?     1     ?     ?  
58  1  1  A  61  VAL  A  61  .  ?        ?     ?     ?     ?  
59  1  1  A  62  VAL  A  62  .  ?        ?     ?     ?     ?  
60  1  1  A  63  GLU  A  63  .  ?        ?     ?     ?     ?  
61  1  1  A  64  LYS  A  64  .  ?        ?     ?     ?     ?  
62  1  1  A  65  PHE  A  65  .  ?        ?     ?     ?     ?  
63  1  1  A  66  LEU  A  66  .  ?        ?     ?     ?     ?  
64  1  1  A  67  LYS  A  67  .  ?        ?     ?     ?     ?  
65  1  1  A  68  ARG  A  68  .  ?        ?     1     ?     ?  
66  1  1  A  69  ALA  A  69  .  ?        ?     ?     ?     ?  
67  1  1  A  70  GLU  A  70  .  ?        ?     ?     ?     ?  
68  1  1  A  71  ASN  A  71  .  ?        ?     ?     ?     ?  
69  1  1  A  72  SER  A  72  .  ?        ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  OUTLIER       ?       ?  ?         5   9  1.58  12  0.84  molprobity  
 2   2  tp       -105.2   109.2  Favored  11   8  0.81  11  0.89  molprobity  
 3   3  mtt180    -67.5  -178.6  Allowed  13  11  1.16  14  1.02  molprobity  
 4   4  m         -56.8   123.6  Favored   4   6  0.91   8  0.98  molprobity  
 5   5  mt-30     -69.9   -12.1  Favored   8   9  0.86  12  0.84  molprobity  
 6   6  OUTLIER  -131.1   108.0  Favored   4   6  0.84   8  0.98  molprobity  
 7   7  mt        -69.4   -34.2  Favored  11   8  0.80  11  0.81  molprobity  
 8   8  mtpt     -118.5   116.0  Favored  13   9  0.78  11  0.85  molprobity  
 9   9  OUTLIER   -89.6  -177.3  Favored   7   7  0.88  10  0.87  molprobity  
10  10  OUTLIER   -84.1   113.7  Favored   9  13  0.94  18  1.17  molprobity  
11  11  m         -90.2   -34.8  Favored   5   6  0.82   8  0.56  molprobity  
12  12  mttt      -76.0   139.5  Favored  13   9  0.88  12  0.84  molprobity  
13  13  Cg_endo   -83.4   160.6  Favored   7   8  0.70  11  0.67  molprobity  
14  14  p90      -162.2   155.7  Favored   9  12  1.07  16  0.68  molprobity  
15  15  t60       -65.3   140.0  Favored   7  11  0.73  16  0.92  molprobity  
16  16  Cg_endo   -76.6   -43.4  Allowed   7   8  0.85  11  0.88  molprobity  
17  17  tttt      -50.7   -25.6  Favored  13   9  1.00  11  0.83  molprobity  
18  18  m-30      -60.8   -39.4  Favored   9  12  1.08  16  0.84  molprobity  
19  19  mt        -58.4   122.8  Favored  11   8  0.82  11  0.81  molprobity  
20  20  tttt      -89.2   -23.0  Favored  13   9  0.74  11  0.81  molprobity  
21  21  mt-10    -145.1   102.3  Favored   6   8  1.65   9  0.89  molprobity  
22  22  ?             ?       ?  ?        13   7  0.94   6  1.20  mogul       
23  23  ptp180   -122.4   127.1  Favored  13  11  1.13  14  0.97  molprobity  
24  24  m         -98.0   152.5  Favored   9   7  0.85  10  0.71  molprobity  
25  25  mt       -105.4   133.5  Favored  11   8  0.82  11  0.77  molprobity  
26  26  mt-10     -71.3   174.4  Favored   6   9  1.58  12  0.83  molprobity  
27  27  OUTLIER  -104.8   161.9  Favored   5   6  0.89   8  0.57  molprobity  
28  28  ?        -176.4  -149.4  Favored   3   4  1.65   6  1.03  molprobity  
29  29  Cg_endo   -73.7   -32.2  Favored   7   8  0.75  11  0.74  molprobity  
30  30  p-80      -63.3   -35.6  Favored   7  11  0.87  15  0.70  molprobity  
31  31  OUTLIER  -163.6   109.8  Allowed   4   6  0.78   8  0.99  molprobity  
32  32  ?         -64.3   -33.9  Favored   5   5  1.08   7  0.48  molprobity  
33  33  m-80      -83.3   134.0  Favored   6   8  0.94  11  0.81  molprobity  
34  34  m         -73.7   147.4  Favored   7   7  0.88  10  0.75  molprobity  
35  35  tp10     -132.9   128.0  Favored   6   9  1.60  12  0.81  molprobity  
36  36  mp        -88.7   159.5  Favored  11   8  0.77  11  0.80  molprobity  
37  37  mt       -146.0   132.2  Favored  11   8  0.90  11  0.81  molprobity  
38  38  m        -132.6   165.0  Favored   9   7  0.74  10  0.70  molprobity  
39  39  tttt     -135.7    94.0  Favored  13   9  0.74  11  0.79  molprobity  
40  40  mt        -50.1   142.6  Favored  11   8  0.81  11  0.88  molprobity  
41  41  m         -59.4   -25.6  Favored   5   6  0.84   8  0.52  molprobity  
42  42  m-20      -66.4   -13.2  Favored   4   8  0.95  11  0.75  molprobity  
43  43  ?         103.1    35.7  Favored   3   4  1.46   5  0.82  molprobity  
44  44  tpt180   -115.4   157.2  Favored  13  11  1.15  14  1.00  molprobity  
45  45  OUTLIER  -128.3   116.8  Favored   6   9  1.57  12  0.84  molprobity  
46  46  OUTLIER  -134.1   125.7  Favored  11   8  0.93  11  0.94  molprobity  
47  47  m         -86.7   140.7  Favored   4   6  0.96   8  0.95  molprobity  
48  48  mt        -98.9   153.6  Favored  11   8  0.74  11  0.81  molprobity  
49  49  t0       -100.3   116.3  Favored   4   8  1.04  12  0.79  molprobity  
50  50  Cg_endo   -69.2    -6.9  Favored   7   8  0.72  11  0.69  molprobity  
51  51  mttt      -64.6   -27.7  Favored  13   9  0.70  11  0.80  molprobity  
52  52  mp0       -85.6   166.9  Favored   6   9  1.56  12  0.81  molprobity  
53  53  OUTLIER   -91.5   -17.3  Favored   6   8  0.87  11  0.81  molprobity  
54  54  p-90      -79.1   -36.9  Favored  10  16  0.88  23  1.48  molprobity  
55  55  t         -64.7   -43.6  Favored   9   7  0.85  10  0.72  molprobity  
56  56  pt20      -73.0   -31.1  Favored   8   9  0.84  12  0.81  molprobity  
57  57  mtp85     -75.9   -41.0  Favored  13  11  1.12  14  1.03  molprobity  
58  58  t         -59.1   -41.3  Favored   9   7  0.79  10  0.74  molprobity  
59  59  t         -62.8   -42.1  Favored   9   7  0.89  10  0.72  molprobity  
60  60  mt-10     -70.7   -38.3  Favored   6   9  1.60  12  0.84  molprobity  
61  61  tttm      -63.4   -24.4  Favored  13   9  0.73  11  0.77  molprobity  
62  62  t80       -97.0   -39.9  Favored   9  12  0.99  16  0.87  molprobity  
63  63  OUTLIER  -101.6    15.8  Favored  11   8  0.93  11  0.92  molprobity  
64  64  OUTLIER   -49.2   154.3  Allowed  13   9  0.88  11  0.78  molprobity  
65  65  mtp85      71.4   161.0  Allowed  13  11  1.24  14  0.95  molprobity  
66  66  ?        -121.2   126.6  Favored   5   5  0.99   7  0.52  molprobity  
67  67  mp0      -109.2   -79.6  Allowed   6   9  1.62  12  0.74  molprobity  
68  68  OUTLIER  -171.2    91.2  Allowed   6   8  0.98  11  0.82  molprobity  
69  69  m             ?       ?  ?         5   6  0.81   5  0.63  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1  10  CG     1  0.44  2.47  
 2  13  HB3    2  0.49  2.42  
 3  14  CZ     3  0.57  2.34  
 4  15  NE2    4  0.67  2.57  
 5  15  NE2    5  0.54  2.16  
 6  15  NE2    6  0.41  2.28  
 7  15  HB3    7  0.54  2.37  
 8  16  HA     8  0.49  1.84  
 9  17  CB     4  0.67  2.57  
10  17  HB3    5  0.54  2.16  
11  17  HB2    6  0.41  2.28  
12  18  CE2    7  0.54  2.37  
13  19  HD11   3  0.57  2.34  
14  19  HD12   8  0.49  1.84  
15  22  HD13   9  0.51  2.35  
16  22  HD13  10  0.47  1.85  
17  22  O     11  0.47  2.10  
18  22  HD22  11  0.47  2.10  
19  24  HG12  12  0.41  1.92  
20  36  HD13  13  0.54  2.33  
21  36  HG23  12  0.41  1.92  
22  38  HG22  14  0.58  1.98  
23  38  CG1    9  0.51  2.35  
24  38  HG12  10  0.47  1.85  
25  46  O     14  0.58  1.98  
26  46  HD23   1  0.44  2.47  
27  48  HD23  15  0.43  2.29  
28  48  N     15  0.43  2.29  
29  48  HB3   16  0.43  1.91  
30  54  CE2   17  0.62  2.28  
31  54  CZ2   18  0.54  2.37  
32  54  CZ2   19  0.44  3.00  
33  54  CG     2  0.49  2.42  
34  55  HG23  17  0.62  2.28  
35  55  HG23  18  0.54  2.37  
36  55  CG1   13  0.54  2.33  
37  55  CG2   19  0.44  3.00  
38  55  HG22  16  0.43  1.91  
#
loop_
_pdbx_vrpt_instance_intra_plane_outliers.ordinal
_pdbx_vrpt_instance_intra_plane_outliers.instance_id
_pdbx_vrpt_instance_intra_plane_outliers.type
_pdbx_vrpt_instance_intra_plane_outliers.plane_rmsd
1   3  sidechain  0.32  
2  23  sidechain  0.31  
3  44  sidechain  0.32  
4  57  sidechain  0.31  
5  65  sidechain  0.32  
#
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal      1
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id  22
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1       CG
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2       CB
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3       CA
_pdbx_vrpt_instance_mogul_angle_outliers.obsval       109.89
_pdbx_vrpt_instance_mogul_angle_outliers.mean         115.34
_pdbx_vrpt_instance_mogul_angle_outliers.numobs       27
_pdbx_vrpt_instance_mogul_angle_outliers.stdev        2.49
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore       -2.19
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff      0.44
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  22  O   C   CA  CB     41.11  53.52    18  26.74  16.56  0.00  
2  22  CA  CB  CG  CD1   128.51  53.69  8266  15.12   0.05  0.41  
3  22  CA  CB  CG  CD2  -110.98  53.56  8266  11.43   0.04  0.42  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
