data_1EC4

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1EC4
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1EC4
_pdbx_vrpt_summary.PDB_deposition_date         2000-01-25
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-02-16
_pdbx_vrpt_summary.report_creation_date        2022-08-20:12:26
_pdbx_vrpt_summary.attempted_validation_steps  mogul,molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "HEXITOL DODECANUCLEOTIDE"
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
1  1  1  A  A  
2  1  1  B  B  
#
_pdbx_vrpt_summary_geometry.ordinal                 1
_pdbx_vrpt_summary_geometry.clashscore_full_length  51.93
_pdbx_vrpt_summary_geometry.num_H_reduce            322
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
 1  1  1  A   1  6HG  A   1  .  ?     1     2  3  
 2  1  1  A   2  6HC  A   2  .  ?     3     ?  2  
 3  1  1  A   3  6HG  A   3  .  ?     2     2  3  
 4  1  1  A   4  6HC  A   4  .  ?     4     ?  2  
 5  1  1  A   5  6HT  A   5  .  ?     4     ?  4  
 6  1  1  A   6  6HT  A   6  .  ?     4     ?  4  
 7  1  1  A   7  6HT  A   7  .  ?     6     ?  4  
 8  1  1  A   8  6HT  A   8  .  ?     2     ?  5  
 9  1  1  A   9  6HG  A   9  .  ?     2     2  3  
10  1  1  A  10  6HC  A  10  .  ?     4     ?  2  
11  1  1  A  11  6HG  A  11  .  ?     2     2  3  
12  1  1  A  12  6HC  A  12  .  ?     2     ?  2  
13  1  1  B   1  6HG  B  13  .  ?     2     2  2  
14  1  1  B   2  6HC  B  14  .  ?     4     ?  2  
15  1  1  B   3  6HG  B  15  .  ?     2     2  1  
16  1  1  B   4  6HC  B  16  .  ?     5     ?  2  
17  1  1  B   5  6HT  B  17  .  ?     5     ?  4  
18  1  1  B   6  6HT  B  18  .  ?     4     ?  4  
19  1  1  B   7  6HT  B  19  .  ?     6     ?  4  
20  1  1  B   8  6HT  B  20  .  ?     2     ?  5  
21  1  1  B   9  6HG  B  21  .  ?     2     2  3  
22  1  1  B  10  6HC  B  22  .  ?     4     ?  2  
23  1  1  B  11  6HG  B  23  .  ?     2     2  3  
24  1  1  B  12  6HC  B  24  .  ?     4     ?  2  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  13  18  1.08  19  1.10  mogul  
 2   2  13  18  0.37  21  0.94  mogul  
 3   3  13  18  1.14  19  1.01  mogul  
 4   4  13  18  0.36  21  0.88  mogul  
 5   5  14  19  0.47  24  1.35  mogul  
 6   6  14  19  0.42  24  1.33  mogul  
 7   7  14  19  0.46  24  1.37  mogul  
 8   8  14  19  0.45  24  1.40  mogul  
 9   9  13  18  1.13  19  1.23  mogul  
10  10  13  18  0.40  21  1.01  mogul  
11  11  13  18  1.14  19  1.05  mogul  
12  12  14  18  0.38  21  0.88  mogul  
13  13  13  18  1.10  19  1.10  mogul  
14  14  13  18  0.37  21  0.93  mogul  
15  15  13  18  1.11  19  0.98  mogul  
16  16  13  18  0.36  21  0.88  mogul  
17  17  14  19  0.46  24  1.36  mogul  
18  18  14  19  0.40  24  1.35  mogul  
19  19  14  19  0.49  24  1.37  mogul  
20  20  14  19  0.43  24  1.39  mogul  
21  21  13  18  1.10  19  1.20  mogul  
22  22  13  18  0.39  21  0.98  mogul  
23  23  13  18  1.14  19  1.09  mogul  
24  24  14  18  0.34  21  0.90  mogul  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   1  "H2''"   1  0.42  2.14  
 2   2  H6       2  0.48  2.09  
 3   2  "O4'"    2  0.48  2.09  
 4   2  "O4'"    1  0.42  2.14  
 5   3  "H2''"   3  0.71  1.84  
 6   3  N3       4  0.59  2.11  
 7   4  "O4'"    3  0.71  1.84  
 8   4  "O4'"    5  0.45  2.12  
 9   4  "H6'1"   4  0.59  2.11  
10   4  H6       5  0.45  2.12  
11   5  "H2''"   6  0.65  1.92  
12   5  H6       7  0.54  2.03  
13   5  "O4'"    7  0.54  2.03  
14   5  O2       8  0.49  2.07  
15   6  "O4'"    6  0.65  1.92  
16   6  "O4'"    9  0.51  2.05  
17   6  H6       9  0.51  2.05  
18   6  "H6'1"   8  0.49  2.07  
19   7  O2      10  0.77  1.78  
20   7  "H2''"  11  0.67  1.89  
21   7  H6      12  0.63  1.94  
22   7  "O4'"   12  0.63  1.94  
23   7  C6      13  0.46  2.41  
24   7  "H3'"   13  0.46  2.41  
25   8  "H6'1"  10  0.77  1.78  
26   8  "O4'"   11  0.67  1.89  
27   9  "H2''"  14  0.68  1.88  
28   9  N3      15  0.67  2.04  
29  10  "O4'"   14  0.68  1.88  
30  10  "O4'"   16  0.47  2.08  
31  10  "H6'1"  15  0.67  2.04  
32  10  H6      16  0.47  2.08  
33  11  "H2''"  17  0.60  1.95  
34  11  N3      18  0.47  2.25  
35  12  "O4'"   17  0.60  1.95  
36  12  "H6'1"  18  0.47  2.25  
37  13  "H2''"  19  0.44  2.13  
38  13  N3      20  0.42  2.29  
39  14  H6      21  0.47  2.10  
40  14  "O4'"   21  0.47  2.10  
41  14  "O4'"   19  0.44  2.13  
42  14  "H6'1"  20  0.42  2.29  
43  15  "H2''"  22  0.66  1.91  
44  15  N3      23  0.50  2.20  
45  16  "O4'"   22  0.66  1.91  
46  16  "O4'"   24  0.41  2.16  
47  16  "H6'1"  23  0.50  2.20  
48  16  H6      24  0.41  2.16  
49  16  O2      25  0.40  2.15  
50  17  "H2''"  26  0.65  1.92  
51  17  O2      27  0.59  1.98  
52  17  H6      28  0.54  2.03  
53  17  "O4'"   28  0.54  2.03  
54  17  "H6'1"  25  0.40  2.15  
55  18  "O4'"   26  0.65  1.92  
56  18  "O4'"   29  0.52  2.05  
57  18  "H6'1"  27  0.59  1.98  
58  18  H6      29  0.52  2.05  
59  19  O2      30  0.73  1.80  
60  19  "H2''"  31  0.68  1.88  
61  19  H6      32  0.61  1.94  
62  19  "O4'"   32  0.61  1.94  
63  19  C6      33  0.46  2.41  
64  19  "H3'"   33  0.46  2.41  
65  20  "H6'1"  30  0.73  1.80  
66  20  "O4'"   31  0.68  1.88  
67  21  "H2''"  34  0.60  1.96  
68  21  N3      35  0.58  2.14  
69  22  "O4'"   34  0.60  1.96  
70  22  "O4'"   36  0.52  2.03  
71  22  "H6'1"  35  0.58  2.14  
72  22  H6      36  0.52  2.03  
73  23  "H2''"  37  0.63  1.92  
74  23  N3      38  0.47  2.24  
75  24  "O4'"   37  0.63  1.92  
76  24  "H6'1"  38  0.47  2.24  
77  24  C6      39  0.44  2.43  
78  24  "H3'"   39  0.44  2.43  
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
 1   1  C8  N7  1.29  1.35  60  0.02  -3.15  0.02  
 2   1  C5  C6  1.42  1.47  49  0.02  -2.28  0.00  
 3   3  C8  N7  1.29  1.35  60  0.02  -3.31  0.02  
 4   3  C5  C6  1.42  1.47  49  0.02  -2.53  0.00  
 5   9  C8  N7  1.29  1.35  60  0.02  -3.30  0.02  
 6   9  C5  C6  1.42  1.47  49  0.02  -2.53  0.00  
 7  11  C8  N7  1.29  1.35  60  0.02  -3.36  0.02  
 8  11  C5  C6  1.42  1.47  49  0.02  -2.50  0.00  
 9  13  C8  N7  1.29  1.35  60  0.02  -3.22  0.02  
10  13  C5  C6  1.42  1.47  49  0.02  -2.35  0.00  
11  15  C8  N7  1.29  1.35  60  0.02  -3.21  0.02  
12  15  C5  C6  1.42  1.47  49  0.02  -2.33  0.00  
13  21  C8  N7  1.29  1.35  60  0.02  -3.24  0.02  
14  21  C5  C6  1.42  1.47  49  0.02  -2.39  0.00  
15  23  C8  N7  1.29  1.35  60  0.02  -3.37  0.02  
16  23  C5  C6  1.42  1.47  49  0.02  -2.56  0.00  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
 1   1  "C5'"  "C4'"  "C3'"  110.16  113.54   22  1.40  -2.42  0.91  
 2   1  "C6'"  "O4'"  "C4'"  115.08  112.19   88  1.35   2.13  0.12  
 3   1  O6     C6     C5     128.57  124.37   49  1.95   2.15  1.28  
 4   2  "C5'"  "C4'"  "C3'"  109.89  113.70   31  1.55  -2.45  0.53  
 5   2  "C6'"  "O4'"  "C4'"  115.45  112.19   88  1.35   2.41  0.50  
 6   3  "C5'"  "C4'"  "C3'"  110.34  113.70   31  1.55  -2.17  0.09  
 7   3  "C6'"  "O4'"  "C4'"  114.91  112.19   88  1.35   2.01  0.04  
 8   3  O6     C6     C5     128.28  124.37   49  1.95   2.00  0.99  
 9   4  "C5'"  "C4'"  "C3'"  110.18  113.70   31  1.55  -2.27  0.25  
10   4  "C6'"  "O4'"  "C4'"  115.21  112.19   88  1.35   2.23  0.25  
11   5  "C5'"  "C4'"  "C3'"  110.04  113.70   31  1.55  -2.36  0.39  
12   5  "C6'"  "O4'"  "C4'"  115.52  112.19   88  1.35   2.46  0.56  
13   5  C6     C5     C4     121.06  118.03  591  0.84   3.62  0.13  
14   5  C5M    C5     C6     119.21  122.85  855  1.34  -2.72  0.12  
15   6  "C5'"  "C4'"  "C3'"  109.94  113.70   31  1.55  -2.43  0.49  
16   6  "C6'"  "O4'"  "C4'"  115.67  112.19   88  1.35   2.57  0.72  
17   6  C6     C5     C4     120.86  118.03  591  0.84   3.39  0.05  
18   6  C5M    C5     C6     119.49  122.85  855  1.34  -2.51  0.02  
19   7  "C6'"  "O4'"  "C4'"  115.61  112.19   88  1.35   2.52  0.65  
20   7  "C3'"  "C2'"  "C1'"  109.79  112.39   20  1.17  -2.23  0.17  
21   7  C6     C5     C4     120.95  118.03  591  0.84   3.50  0.03  
22   7  C5M    C5     C6     119.54  122.85  855  1.34  -2.48  0.01  
23   8  "C5'"  "C4'"  "C3'"  110.31  113.70   31  1.55  -2.19  0.12  
24   8  "C6'"  "O4'"  "C4'"  115.11  112.19   88  1.35   2.15  0.16  
25   8  C6     C5     C4     121.07  118.03  591  0.84   3.63  0.15  
26   8  C5M    C5     C6     119.50  122.85  855  1.34  -2.51  0.03  
27   8  C5     C6     N1     121.00  123.34  431  1.03  -2.28  0.04  
28   9  "C5'"  "C4'"  "C3'"  109.32  113.70   31  1.55  -2.83  1.11  
29   9  "C6'"  "O4'"  "C4'"  115.84  112.19   88  1.35   2.69  0.89  
30   9  O6     C6     C5     128.52  124.37   49  1.95   2.12  1.23  
31  10  "C5'"  "C4'"  "C3'"  109.77  113.70   31  1.55  -2.54  0.66  
32  10  "C6'"  "O4'"  "C4'"  115.85  112.19   88  1.35   2.70  0.89  
33  11  "C5'"  "C4'"  "C3'"  110.29  113.70   31  1.55  -2.20  0.14  
34  11  "C6'"  "O4'"  "C4'"  115.19  112.19   88  1.35   2.21  0.23  
35  11  O6     C6     C5     128.38  124.37   49  1.95   2.05  1.09  
36  12  "C5'"  "C4'"  "C3'"  110.02  113.70   31  1.55  -2.37  0.40  
37  12  "C6'"  "O4'"  "C4'"  115.25  112.19   88  1.35   2.26  0.29  
38  13  "C5'"  "C4'"  "C3'"  110.19  113.54   22  1.40  -2.40  0.88  
39  13  O6     C6     C5     128.51  124.37   49  1.95   2.12  1.22  
40  14  "C5'"  "C4'"  "C3'"  109.70  113.70   31  1.55  -2.58  0.73  
41  14  "C6'"  "O4'"  "C4'"  115.38  112.19   88  1.35   2.36  0.43  
42  15  O6     C6     C5     128.53  124.37   49  1.95   2.13  1.24  
43  16  "C5'"  "C4'"  "C3'"  110.16  113.70   31  1.55  -2.28  0.26  
44  16  "C6'"  "O4'"  "C4'"  115.10  112.19   88  1.35   2.14  0.14  
45  17  "C5'"  "C4'"  "C3'"  110.07  113.70   31  1.55  -2.34  0.36  
46  17  "C6'"  "O4'"  "C4'"  115.41  112.19   88  1.35   2.38  0.46  
47  17  C6     C5     C4     121.12  118.03  591  0.84   3.69  0.20  
48  17  C5M    C5     C6     119.24  122.85  855  1.34  -2.70  0.15  
49  18  "C5'"  "C4'"  "C3'"  109.90  113.70   31  1.55  -2.45  0.53  
50  18  "C6'"  "O4'"  "C4'"  115.72  112.19   88  1.35   2.60  0.76  
51  18  C6     C5     C4     120.92  118.03  591  0.84   3.45  0.00  
52  18  C5M    C5     C6     119.54  122.85  855  1.34  -2.48  0.00  
53  19  "C6'"  "O4'"  "C4'"  115.62  112.19   88  1.35   2.53  0.67  
54  19  "C3'"  "C2'"  "C1'"  109.92  112.39   20  1.17  -2.11  0.03  
55  19  C6     C5     C4     120.95  118.03  591  0.84   3.49  0.03  
56  19  C5M    C5     C6     119.51  122.85  855  1.34  -2.50  0.04  
57  20  "C5'"  "C4'"  "C3'"  110.24  113.70   31  1.55  -2.23  0.19  
58  20  "C6'"  "O4'"  "C4'"  115.23  112.19   88  1.35   2.24  0.27  
59  20  C6     C5     C4     121.07  118.03  591  0.84   3.63  0.15  
60  20  C5M    C5     C6     119.47  122.85  855  1.34  -2.53  0.00  
61  20  C5     C6     N1     121.08  123.34  431  1.03  -2.19  0.01  
62  21  "C5'"  "C4'"  "C3'"  109.44  113.70   31  1.55  -2.75  0.99  
63  21  "C6'"  "O4'"  "C4'"  115.69  112.19   88  1.35   2.58  0.73  
64  21  O6     C6     C5     128.56  124.37   49  1.95   2.14  1.27  
65  22  "C5'"  "C4'"  "C3'"  109.97  113.70   31  1.55  -2.41  0.46  
66  22  "C6'"  "O4'"  "C4'"  115.69  112.19   88  1.35   2.58  0.73  
67  23  "C5'"  "C4'"  "C3'"  109.81  113.70   31  1.55  -2.51  0.62  
68  23  "C6'"  "O4'"  "C4'"  115.38  112.19   88  1.35   2.35  0.42  
69  23  O6     C6     C5     128.32  124.37   49  1.95   2.02  1.03  
70  24  "C5'"  "C4'"  "C3'"  109.93  113.70   31  1.55  -2.43  0.50  
71  24  "C6'"  "O4'"  "C4'"  115.15  112.19   88  1.35   2.19  0.20  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
