data_1AD7

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1AD7
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1AD7
_pdbx_vrpt_summary.PDB_deposition_date         1997-02-21
_pdbx_vrpt_summary.PDB_revision_number         5
_pdbx_vrpt_summary.PDB_revision_date           2024-06-05
_pdbx_vrpt_summary.report_creation_date        2024-05-29:17:16
_pdbx_vrpt_summary.attempted_validation_steps  mogul,molprobity,validation-pack,coreclust,chemicalshiftanalysis,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "CONANTOXIN G"
#
_pdbx_vrpt_asym.label_asym_id  A
_pdbx_vrpt_asym.entity_id      1
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  pdb    
2  nmr  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   7.87  158937  ?     ?     
2  2  1  27.64   12864  ?     ?     
3  1  2   1.38  154571  ?     ?     
4  2  2  11.39   11451  ?     ?     
5  1  3   0.05  154315  ?     ?     
6  2  3   0.60   11428  ?     ?     
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  0.52  
2  4  2  A  1  1  A  0.52  
3  5  3  A  1  1  A  0.01  
4  6  3  A  1  1  A  0.01  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      1.32
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       1.38
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   92
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  114
#
_pdbx_vrpt_summary_geometry.ordinal                                    1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers              9.09
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers_full_length  9.09
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers                   54.55
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers_full_length       54.55
_pdbx_vrpt_summary_geometry.clashscore                                 24.91
_pdbx_vrpt_summary_geometry.clashscore_full_length                     24.91
_pdbx_vrpt_summary_geometry.num_H_reduce                               123
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                             92
_pdbx_vrpt_summary_geometry.bonds_RMSZ                                 1.38
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                            114
_pdbx_vrpt_summary_geometry.angles_RMSZ                                1.32
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A   1  GLY  A   1  .  ?        ?     ?     ?     ?     ?     ?  
 2  1  1  A   2  GLU  A   2  .  ?        1     ?     ?     ?     ?     ?  
 3  1  1  A   3  CGU  A   3  .  ?        ?     ?     ?     1     1     4  
 4  1  1  A   4  CGU  A   4  .  ?        ?     ?     4     1     1     4  
 5  1  1  A   5  LEU  A   5  .  ?        ?     ?     8     ?     ?     ?  
 6  1  1  A   6  GLN  A   6  .  ?        ?     ?     ?     ?     ?     ?  
 7  1  1  A   7  CGU  A   7  .  ?        ?     ?     ?     1     1     3  
 8  1  1  A   8  ASN  A   8  .  ?        ?     ?     ?     ?     ?     ?  
 9  1  1  A   9  GLN  A   9  .  ?        ?     ?     ?     ?     ?     ?  
10  1  1  A  10  CGU  A  10  .  ?        ?     ?     ?     1     1     3  
11  1  1  A  11  LEU  A  11  .  ?        ?     ?     ?     ?     ?     ?  
12  1  1  A  12  ILE  A  12  .  ?        ?     ?     2     ?     ?     ?  
13  1  1  A  13  ARG  A  13  .  ?        ?     2     ?     ?     ?     ?  
14  1  1  A  14  CGU  A  14  .  ?        ?     ?     ?     1     1     4  
15  1  1  A  15  LYS  A  15  .  ?        ?     ?     ?     ?     ?     ?  
16  1  1  A  16  SER  A  16  .  ?        ?     ?     ?     ?     ?     ?  
17  1  1  A  17  ASN  A  17  .  ?        ?     ?     ?     ?     ?     ?  
18  1  1  A  18  NH2  A  18  .  ?        ?     ?     ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  ?             ?      ?  ?         5   4  0.24   5  0.59  molprobity  
 2   2  OUTLIER  -158.2   27.8  Allowed   6   8  3.80   9  1.43  molprobity  
 3   3  ?             ?      ?  ?         4   9  1.96   9  1.31  mogul       
 4   4  ?             ?      ?  ?         4   9  1.95   9  1.31  mogul       
 5   5  OUTLIER  -157.2   77.3  Allowed  11   8  0.65  11  0.62  molprobity  
 6   6  OUTLIER   -91.2  -19.0  Favored   8   8  0.87   9  1.33  molprobity  
 7   7  ?             ?      ?  ?         4   9  1.96   9  1.32  mogul       
 8   8  m120     -100.5   67.9  Allowed   6   8  0.68  11  0.89  molprobity  
 9   9  mm-40    -100.7   23.1  Favored   8   8  0.86   9  1.31  molprobity  
10  10  ?             ?      ?  ?         4   9  1.95   9  1.27  mogul       
11  11  tp       -104.6  -35.4  Favored  11   8  0.66  11  0.66  molprobity  
12  12  mt        -93.6   43.3  OUTLIER  11   8  0.87  11  0.88  molprobity  
13  13  OUTLIER   -75.9  -36.7  Favored  13  10  1.39  11  3.11  molprobity  
14  14  ?             ?      ?  ?         4   9  1.98   9  1.31  mogul       
15  15  OUTLIER  -113.4   54.9  Allowed  13   9  0.65  11  0.71  molprobity  
16  16  OUTLIER  -135.3  -42.3  Allowed   5   6  0.84   8  0.58  molprobity  
17  17  t30      -114.1   77.5  Allowed   6   7  0.75   8  0.86  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   4  C     1  1.02  1.84  
 2   4  C     2  0.83  2.56  
 3   4  HG    3  0.72  2.14  
 4   4  CA    4  0.41  2.44  
 5   5  HD23  1  1.02  1.84  
 6   5  HD23  5  0.82  1.89  
 7   5  HD23  4  0.41  2.44  
 8   5  CD2   2  0.83  2.56  
 9   5  CD2   3  0.72  2.14  
10   5  CD2   6  0.64  2.61  
11   5  N     5  0.82  1.89  
12   5  N     6  0.64  2.61  
13  12  O     7  0.43  2.13  
14  12  HG22  7  0.43  2.13  
#
_pdbx_vrpt_instance_intra_bond_outliers.ordinal      1
_pdbx_vrpt_instance_intra_bond_outliers.instance_id  2
_pdbx_vrpt_instance_intra_bond_outliers.atom_1       CD
_pdbx_vrpt_instance_intra_bond_outliers.atom_2       OE2
_pdbx_vrpt_instance_intra_bond_outliers.obs          1.362
_pdbx_vrpt_instance_intra_bond_outliers.mean         1.252
_pdbx_vrpt_instance_intra_bond_outliers.stdev        0.011
_pdbx_vrpt_instance_intra_bond_outliers.Z            10.00
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
1  13  NE  CZ  NH1  124.323  120.300  0.500   8.04  
2  13  NE  CZ  NH2  117.484  120.300  0.500  -5.63  
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
1   3  OE21  CD2  1.36  1.22  7201  0.03  4.70  0.00  
2   4  OE21  CD2  1.36  1.22  7201  0.03  4.68  0.00  
3   7  OE21  CD2  1.36  1.22  7201  0.03  4.69  0.00  
4  10  OE21  CD2  1.36  1.22  7201  0.03  4.68  0.00  
5  14  OE21  CD2  1.36  1.22  7201  0.03  4.68  0.00  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1   3  CB  CG  CD1  118.36  113.11  21  2.03  2.58  0.69  
2   4  CB  CG  CD1  118.40  113.11  21  2.03  2.60  0.65  
3   7  CB  CG  CD1  118.47  113.11  21  2.03  2.64  0.58  
4  10  CB  CG  CD1  118.17  113.11  21  2.03  2.49  0.88  
5  14  CB  CG  CD1  118.38  113.11  21  2.03  2.59  0.67  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
 1   3  CA    CB   CG  CD1  -102.34  49.11  56  17.23  19.15  0.00  
 2   3  CA    CB   CG  CD2   134.29  49.11  56  18.37  18.36  0.00  
 3   3  OE11  CD1  CG  CB    -70.66  59.76  45  29.46   9.72  4.44  
 4   3  OE12  CD1  CG  CB    109.54  60.46  45  29.23   8.62  2.22  
 5   4  CA    CB   CG  CD1   -99.37  49.11  56  19.92  16.18  0.00  
 6   4  CA    CB   CG  CD2   137.22  49.11  56  21.06  15.43  0.00  
 7   4  OE21  CD2  CG  CB    -88.56  56.34  45  20.10   7.91  2.22  
 8   4  OE22  CD2  CG  CB     91.49  57.01  45  20.28   7.49  2.22  
 9   7  OE11  CD1  CG  CB    100.83  54.43  45  19.88   2.73  2.22  
10   7  OE12  CD1  CG  CB    -79.62  55.16  45  20.38   5.09  2.22  
11   7  OE12  CD1  CG  CD2    46.29  53.78  43  30.54   2.94  4.65  
12  10  N     CA   CB  CG     43.41  84.71  45  51.89  11.84  0.00  
13  10  OE11  CD1  CG  CD2   -32.63  55.76  43  34.38   2.80  2.33  
14  10  OE12  CD1  CG  CD2   148.27  57.00  43  33.70  11.55  0.00  
15  14  O     C    CA  CB     86.38  39.03  16  22.61  11.53  0.00  
16  14  N     CA   CB  CG     41.04  87.07  45  51.89  14.21  0.00  
17  14  OE21  CD2  CG  CB    -74.38  59.01  45  26.91   6.26  2.22  
18  14  OE22  CD2  CG  CB    105.75  59.70  45  26.71   6.76  2.22  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
