data_140D

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  140D
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    140D
_pdbx_vrpt_summary.PDB_deposition_date         1993-09-24
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-02-16
_pdbx_vrpt_summary.report_creation_date        2022-08-21:10:36
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3')"  
2  polymer  "DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')"  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  2.23  1.34  295  454  
2  1  2  B  B  2.22  1.34  295  453  
#
_pdbx_vrpt_summary_geometry.ordinal                 1
_pdbx_vrpt_summary_geometry.clashscore_full_length  1.22
_pdbx_vrpt_summary_geometry.num_H_reduce            296
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ          590
_pdbx_vrpt_summary_geometry.bonds_RMSZ              1.34
_pdbx_vrpt_summary_geometry.num_angles_RMSZ         907
_pdbx_vrpt_summary_geometry.angles_RMSZ             2.22
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_plane_outliers
 1  1  1  A   1  DA  A   1  .  ?        ?     ?     ?  
 2  1  1  A   2  DG  A   2  .  ?        1     ?     ?  
 3  1  1  A   3  DC  A   3  .  ?        1     ?     1  
 4  1  1  A   4  DT  A   4  .  ?        2     ?     ?  
 5  1  1  A   5  DT  A   5  .  ?        1     ?     ?  
 6  1  1  A   6  DG  A   6  .  ?        2     ?     1  
 7  1  1  A   7  DC  A   7  .  ?        1     ?     1  
 8  1  1  A   8  DC  A   8  .  ?        ?     ?     ?  
 9  1  1  A   9  DT  A   9  .  ?        2     ?     ?  
10  1  1  A  10  DT  A  10  .  ?        ?     ?     ?  
11  1  1  A  11  DG  A  11  .  ?        1     ?     1  
12  1  1  A  12  DA  A  12  .  ?        1     ?     ?  
13  1  1  A  13  DG  A  13  .  ?        1     ?     ?  
14  1  2  B   1  DC  B  14  .  ?        ?     ?     ?  
15  1  2  B   2  DT  B  15  .  ?        ?     ?     ?  
16  1  2  B   3  DC  B  16  .  ?        4     1     1  
17  1  2  B   4  DA  B  17  .  ?        1     1     1  
18  1  2  B   5  DA  B  18  .  ?        2     ?     1  
19  1  2  B   6  DG  B  19  .  ?        2     ?     ?  
20  1  2  B   7  DG  B  20  .  ?        1     ?     ?  
21  1  2  B   8  DC  B  21  .  ?        1     ?     1  
22  1  2  B   9  DA  B  22  .  ?        1     ?     ?  
23  1  2  B  10  DA  B  23  .  ?        ?     ?     ?  
24  1  2  B  11  DG  B  24  .  ?        1     ?     1  
25  1  2  B  12  DC  B  25  .  ?        1     ?     1  
26  1  2  B  13  DT  B  26  .  ?        1     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  12  21  1.18  33  1.63  molprobity  
 2   2  11  25  1.05  39  2.55  molprobity  
 3   3  11  21  1.23  32  2.65  molprobity  
 4   4  12  22  1.54  34  2.35  molprobity  
 5   5  12  22  1.74  34  2.34  molprobity  
 6   6  11  25  1.19  39  2.41  molprobity  
 7   7  11  21  1.21  32  1.95  molprobity  
 8   8  11  21  1.25  32  1.70  molprobity  
 9   9  12  22  1.57  34  2.27  molprobity  
10  10  12  22  1.54  34  1.94  molprobity  
11  11  11  25  1.08  39  2.44  molprobity  
12  12  11  24  1.60  37  2.21  molprobity  
13  13  12  24  1.13  35  2.14  molprobity  
14  14  12  18  1.14  28  1.62  molprobity  
15  15  12  22  1.59  34  2.01  molprobity  
16  16  11  21  1.12  32  3.29  molprobity  
17  17  11  24  1.24  37  2.19  molprobity  
18  18  11  24  1.38  37  2.26  molprobity  
19  19  11  25  1.15  39  2.22  molprobity  
20  20  11  25  1.44  39  2.34  molprobity  
21  21  11  21  1.43  32  2.29  molprobity  
22  22  11  24  1.26  37  1.96  molprobity  
23  23  11  24  1.30  37  1.75  molprobity  
24  24  11  25  1.24  39  2.27  molprobity  
25  25  11  21  1.45  32  2.04  molprobity  
26  26  13  21  1.64  30  2.16  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1  16  "H2'"  1  0.40  2.52  
2  17  C8     1  0.40  2.52  
#
loop_
_pdbx_vrpt_instance_intra_plane_outliers.ordinal
_pdbx_vrpt_instance_intra_plane_outliers.instance_id
_pdbx_vrpt_instance_intra_plane_outliers.type
_pdbx_vrpt_instance_intra_plane_outliers.plane_rmsd
 1   3  sidechain  0.09  
 2   6  sidechain  0.07  
 3   7  sidechain  0.09  
 4  11  sidechain  0.07  
 5  16  sidechain  0.08  
 6  17  sidechain  0.07  
 7  18  sidechain  0.06  
 8  21  sidechain  0.07  
 9  24  sidechain  0.09  
10  25  sidechain  0.07  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
 1   2  "O4'"  "C1'"  N9     113.441  108.000  0.700   7.77  
 2   3  "O4'"  "C1'"  N1     114.153  108.000  0.700   8.79  
 3   4  C6     C5     C7     119.805  122.900  0.600  -5.16  
 4   4  "O4'"  "C4'"  "C3'"  109.630  106.000  0.600   6.05  
 5   5  "O4'"  "C4'"  "C3'"  110.207  106.000  0.600   7.01  
 6   6  "O4'"  "C1'"  N9     114.280  108.000  0.700   8.97  
 7   6  "O4'"  "C4'"  "C3'"  109.576  106.000  0.600   5.96  
 8   7  "O4'"  "C1'"  N1     104.440  108.000  0.700  -5.08  
 9   9  "O4'"  "C1'"  N1     112.221  108.000  0.700   6.03  
10   9  "O4'"  "C4'"  "C3'"  109.388  106.000  0.600   5.65  
11  11  "O4'"  "C1'"  N9     114.087  108.000  0.700   8.70  
12  12  "O4'"  "C4'"  "C3'"  111.138  106.000  0.600   8.56  
13  13  "O4'"  "C1'"  N9     113.399  108.000  0.700   7.71  
14  16  "C3'"  "C2'"  "C1'"  110.739  102.500  1.200   6.87  
15  16  "C4'"  "C3'"  "C2'"   98.444  103.100  0.900  -5.17  
16  16  "O4'"  "C1'"  N1     111.933  108.000  0.700   5.62  
17  16  "O4'"  "C4'"  "C3'"  112.749  106.000  0.600  11.25  
18  17  "O4'"  "C1'"  N9     114.045  108.000  0.700   8.64  
19  18  "O4'"  "C1'"  N9     112.986  108.000  0.700   7.12  
20  18  "O4'"  "C4'"  "C3'"  109.205  106.000  0.600   5.34  
21  19  "O4'"  "C1'"  N9     112.813  108.000  0.700   6.88  
22  19  "O4'"  "C4'"  "C3'"  109.547  106.000  0.600   5.91  
23  20  "O4'"  "C4'"  "C3'"  111.250  106.000  0.600   8.75  
24  21  "O4'"  "C4'"  "C3'"  110.349  106.000  0.600   7.25  
25  22  "O4'"  "C1'"  N9     112.428  108.000  0.700   6.33  
26  24  "O4'"  "C1'"  N9     113.053  108.000  0.700   7.22  
27  25  "O4'"  "C4'"  "C3'"  109.655  106.000  0.600   6.09  
28  26  "O4'"  "C1'"  N1     111.581  108.000  0.700   5.12  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
