| 71 |
IPD8281 |
Quantitative secretome profiling of Candida glabrata wild-type and aspartyl protease-deficient strains |
Dr Rupinder Kaur |
The project is aimed at deciphering the proteins, which are differentially abundant in the secretome of Candida glabrata wild-type and a mutant strain deleted for eleven cell surface-associated aspartyl-proteases (CgYapsins).
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Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD) |
Shotgun proteomics |
2024-12-07 |
|
| 72 |
IPD3501 |
CgSub2 interactome analysis in the presence and absence of CgHog1 MAPK in Candida glabrata |
Dr Rupinder Kaur |
The objective of the project is to identify CgSub2-interacting proteins in the presence and absence of CgHog1 MAPK in the pathogenic yeast Candida glabrata, with CgSub2 being an interactor of CgHog1.
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Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD) |
Bottom-up |
2024-12-07 |
|
| 73 |
IPD6501 |
Interactome analysis of the CgHog1 MAPK under varied-iron conditions in Candida glabrata |
Dr Rupinder Kaur |
The objective of the project is to identify proteins that interact with CgHog1 under low-iron, regular-iron and high-iron growth conditions in the pathogenic yeast Candida glabrata.
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Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD) |
Bottom-up |
2024-12-07 |
|
| 74 |
IPD7282 |
Label-free quantitative plasma membrane proteome analysis of Candida glabrata wild-type and Cgvps34∆ (lacks phosphatidylinositol 3- phosphate kinase, CgVps34) strains. Label-free quantitative plasma membrane proteome analysis of Candida glabrata wild-type and Cgvps34∆ (lacks phosphatidylinositol 3- phosphate kinase, CgVps34) strains. |
Dr Rupinder Kaur |
The project is aimed at characterizing the effect of loss of phosphatidylinositol 3- phosphate kinase (CgVps34) on the plasma membrane proteome of Candida glabrata.
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Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD) |
Shotgun proteomics |
2024-12-08 |
37490387
|
| 75 |
IPD6867 |
Interactome identification of a glycosylphosphatidylinositol-linked aspartyl protease, CgYps1, in the pathogenic yeast Candida glabrata |
Dr Rupinder Kaur |
The major goal of this project is to identify proteins that interact with CgYps1 aspartyl protease in logarithmic-phase Candida glabrata cells.
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Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD) |
Shotgun proteomics |
2024-12-08 |
|
| 76 |
IPD4304 |
Proteomic profiling of Labeo Rohita; a widely cultivated fish |
Dr Sanjeeva Srivastava |
The aim of this study was to develop a Peptide Atlas repository for Labeo rohita. Using LC-MS/MS, we have performed in-depth proteomics analysis of 19 different sample types, including 17 tissue samples, plasma from female fish and embryo 4-day post fertilization. Whole analysis resulted in the identification of more than...
The aim of this study was to develop a Peptide Atlas repository for Labeo rohita. Using LC-MS/MS, we have performed in-depth proteomics analysis of 19 different sample types, including 17 tissue samples, plasma from female fish and embryo 4-day post fertilization. Whole analysis resulted in the identification of more than 6015 confident canonical proteins along with ~3000 non canonical peoteins corresponding to more than 150 thousands peptides. This proteomic dataset would complement the recently published genome to accelerate further research.
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Proteomics lab, Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay |
Shotgun proteomics, Gel-based Experiment |
2024-12-22 |
34962809
|
| 77 |
IPD3461 |
Identification of differentially regulated proteins of Caenorhabditis elegans during Salmonella enterica Serovar Typhi exposure using Mass Spectrometry |
Dr Krishnaswamy Balamurugan |
Recently, proteomics based studies have become the primary contributors for the understanding of host-pathogen interactions and discovery of various drug targets. Herewith, we have used the popular eukaryotic model organism Caenorhabditis elegans to study the host pathogen interactions at protein levels. Especially, we have employed proteomics approach to monitor the...
Recently, proteomics based studies have become the primary contributors for the understanding of host-pathogen interactions and discovery of various drug targets. Herewith, we have used the popular eukaryotic model organism Caenorhabditis elegans to study the host pathogen interactions at protein levels. Especially, we have employed proteomics approach to monitor the protein players that underwent for differential regulation during host-pathogen interaction through label-free quantitation LC-MS/MS technique. As a result of LC-MS/MS analysis, a total of 3747 differentially regulated proteins were identified during pathogenic condition among which 12 and 04 proteins were upregulated and downregulated with at least 2 folds, respectively. Bioinformatics analyses result suggested that the upregulated proteins have crucial roles in TCA cycle, whereas downregulated proteins were majorly involving in the N-glycosylation synthesis. Additionally, the mRNA levels of up and downregulated proteins were validated using qPCR analysis. Overall, the study suggested that the bacterial infection could target multiple molecular mechanisms to modulate the host machinery which favour the bacterial pathogen for their pathogenesis.
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Department of BiotechnologyAlagappa University, Karaikudi |
Shotgun proteomics |
2025-01-15 |
|
| 78 |
IPD2357 |
Global proteomic analysis of changes in the Caenorhabditis elegans proteome during Klebsiella pneumoniae infection |
Dr Krishnaswamy Balamurugan |
In this study, the changes in the global proteomics of C. elegans were analyzed by proteomics approach. The nematodes were exposed to K. pneumoniae for different time-points (12, 24 and 36 h) and the changes in the regulation were analyzed by employing mass spectrometry.
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Department of BiotechnologyAlagappa University, Karaikudi |
Gel-based experiment |
2025-01-15 |
28932706
|
| 79 |
IPD4220 |
Proteomic analysis of Caenorhabditis elegans wound model reveals novel molecular players involved in repair |
Professor Krishnaswamy Balamurugan |
Now a days, wound healing is becoming a global threat that impact economy of the country severely. Though the steps involved in wound healing are well characterised, direct therapeutics for the accelerated wound healing is comparatively less. This is solely because of the incomplete mechanism of healing and the lack...
Now a days, wound healing is becoming a global threat that impact economy of the country severely. Though the steps involved in wound healing are well characterised, direct therapeutics for the accelerated wound healing is comparatively less. This is solely because of the incomplete mechanism of healing and the lack of knowledge on molecular players involved in wound healing. Hence, in the present study, we have investigated the molecular players involved in wound healing process using a versatile model organism Caenorhabditis elegans through proteomic analyses. Especially, we have employed the high through put proteomic analyses tools such as 2-D GE and LCMS/MS analysis to uncover the molecular players involved in wound healing. As a result of LC-MS/MS analysis at 0 and 24 h, a total of 435 proteins were regulated in both unwounded and wounded conditions in which 13 and 10 proteins were significantly differential regulated. Bioinformatics analyses result suggested that molecular players involved in cortical actin cytoskeleton organization, protein phosphatase binding, and proton transporting ATP synthase activity were identified at 0 h; skeletal muscle myosin thick filament assembly, actin filament depolymerization were identified at 24 h.
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Department of BiotechnologyAlagappa University, Karaikudi |
Top-down |
2025-01-15 |
33831597
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| 80 |
IPD7793 |
Proteomic analysis of Caenorhabditis elegans wound model reveals novel molecular players involved in repair |
Professor Krishnaswamy Balamurugan |
Now a days, wound healing is becoming a global threat that impact economy of the country severely. Though the steps involved in wound healing are well characterised, direct therapeutics for the accelerated wound healing is comparatively less. This is solely because of the incomplete mechanism of healing and the lack...
Now a days, wound healing is becoming a global threat that impact economy of the country severely. Though the steps involved in wound healing are well characterised, direct therapeutics for the accelerated wound healing is comparatively less. This is solely because of the incomplete mechanism of healing and the lack of knowledge on molecular players involved in wound healing. Hence, in the present study, we have investigated the molecular players involved in wound healing process using a versatile model organism Caenorhabditis elegans through proteomic analyses. Especially, we have employed the high through put proteomic analyses tools such as 2-D GE and LCMS/MS analysis to uncover the molecular players involved in wound healing. As a result of 2-D GE analysis, a total of 35 differentially regulated proteins were identified during injury in which 22 and 13 proteins were upregulated and downregulated, respectively. Bioinformatics analyses result suggested that the upregulated proteins have crucial roles in serotonin/ acetyl choline synthesis and calcium signalling, whereas downregulated proteins were majorly involving in ubiquitin mediated proteolysis. Additionally, the mRNA levels of up and downregulated proteins were validated using qPCR analysis. Overall, the study suggested that injury initiates multiple molecular mechanisms to repair the damage.
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Department of BiotechnologyAlagappa University, Karaikudi |
Gel-based experiment |
2025-01-15 |
33831597
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