| 111 |
IPD8610 |
Contryphan sequence diversity: Messy N-terminus processing, effects on chromatographic behaviour and mass spectrometric fragmentation. |
Prof. P. Balaram |
Mass Spectrometric Characterisation of contryphans.
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Top-down |
2025-05-25 |
36587728
|
| 112 |
IPD2008 |
Contryphan sequence diversity:Conus inscriptus |
Prof. P. Balaram |
Mass Spectrometric Characterisation of contryphans.
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Top-down |
2025-05-25 |
36587728
|
| 113 |
IPD3563 |
Contryphan sequence diversity:Conus virgo |
Prof. P. Balaram |
Mass Spectrometric Characterisation of contryphans.
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Top-down |
2025-05-25 |
36587728
|
| 114 |
IPD9056 |
Contryphan sequence diversity:Conus frigidus |
Prof. P. Balaram |
Mass Spectrometric Characterisation of contryphans.
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Top-down |
2025-05-25 |
36587728
|
| 115 |
IPD2840 |
Analysis of venom peptide from Conus betulinus |
Prof. P. Balaram |
Characterization of venom peptides from Conus betulinus using mass spectrometry
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Shotgun proteomics |
2025-05-25 |
38009400
|
| 116 |
IPD9367 |
Contryphan sequence diversity:Conus amadis |
Prof. P. Balaram |
Mass Spectrometric Characterisation of contryphans.
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Top-down |
2025-05-25 |
36587728
|
| 117 |
IPD7154 |
Analysis of Conus monile venom duct |
Dr. P. Balaram |
Mass Spectrometric Characterisation of Linear Conotoxins.
|
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India |
Top-down |
2025-05-25 |
38009400
|
| 118 |
IPD8488 |
LC-MS analysis of human tumour cell lines |
Dr. Medicharla Venkata Jagannadham |
Main aim of this study was to identify and characterize human hypothetical proteins. These are the protein sequences for which there is no experimental evidence at translation level and are functionally unknown. First part of the project deals with identification and characterization of hypothetical proteins using label-free lc-ms/ms approaches. Second...
Main aim of this study was to identify and characterize human hypothetical proteins. These are the protein sequences for which there is no experimental evidence at translation level and are functionally unknown. First part of the project deals with identification and characterization of hypothetical proteins using label-free lc-ms/ms approaches. Second part deals with providing functional clues to those identified proteins thus connecting the missing links in biological mechanisms.
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|
CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India |
Gel-based experiment |
2025-06-18 |
|
| 119 |
IPD9282 |
Proteins from Outer Membrane Vesicules of Pseudomonas syringae Lz4W |
Dr. Medicharla Venkata Jagannadham |
The proteins from Outer Membrane Vesicles (OMVs) were extracted by chilled acetone method. The proteins were separated on 1D SDS-PAGE (12%). From the gel, total 10 fractions were made and all of them were subjected to in gel digestion using trypsin. The MS/MS spectra of the resulting tryptic peptides were...
The proteins from Outer Membrane Vesicles (OMVs) were extracted by chilled acetone method. The proteins were separated on 1D SDS-PAGE (12%). From the gel, total 10 fractions were made and all of them were subjected to in gel digestion using trypsin. The MS/MS spectra of the resulting tryptic peptides were recordedby using LC coupled ESI-MS/MS (Thermo Orbitrap Velos). The mass spectral data thus obtained was analysed by using Proteome Discoverer 1.3. Since the genome sequence of P. syringae Lz4W is not available, the data was searched against a database prepared from 20 related Pseudomonas species whose genome sequence is available on Uniprot (Updated upto Jan 2013). The search was observed by using nodes Sequest and Mascot both, the enzyme selected was trypsin with maximum 2 missed cleavages, the precursor tolerance set at 10 ppm, fragment tolerance at 0.8 Da, carbamidomethylated cystein (57.02 Da) as fixed modification, oxidised methionine (15.99 Da) as variable modification. After the search is over, the results were refined applying result filters as Peptide confidence (High) and Differentiable Proteins (including distinct proteins), which makes sure that each protein entry in the list is identified with at least one unique peptide.
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|
CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India |
Bottom-up |
2025-06-18 |
24437924
|
| 120 |
IPD2486 |
Mass spectral Analysis of Synthetic Peptides: Implications in Proteomics |
Dr. Medicharla Venkata Jagannadham |
Tryptic synthetic peptides generated in silico from human proteome are used as standards to evaluate the performance of MS and algorithm used to identify the proteins.
|
CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India |
Shotgun proteomics |
2025-06-18 |
33953644
|
