Sample Info
1. Bacterial isolates obtained from Human Skin and Lesional samples
- Title: Bacterial isolates obtained from Human Skin and Lesional samples
- Description: Bacterial isolates obtained from Human Skin and Lesional samples
- Organism: Escherichia coli Common name:E. coli
- Centre Name: Dr. Souvik Mukherjee, BRIC-National Institute of Biomedical Genomics
- INDA Sample Accession: INS0017625
- INSDC Accession: ERS24937334, SAMEA118547470
- Tax ID: 562
geographic location (longitude): 88.3629° E DD
environmental_sample: No
host health state: diseased
collected_by: Dr. Souvik Mukherjee
collection date : 2025
geographic location (country and/or sea): India
host scientific name: Homo Sapiens
Is the sequenced pathogen host associated?: Yes
isolate: NIBMG_HMR_AN5
Experiment and Run details
1. Bacterial Whole Genome Sequencing
Library Source: GENOMIC
Library Selection: size fractionation
Instrument model: Illumina NovaSeq 6000
Instrument model: WGS
Library layout: PAIRED
Design description:
Library name:
Insert Size: 150
Library Construction protocol:
Library Selection: size fractionation
Instrument model: Illumina NovaSeq 6000
Instrument model: WGS
Library layout: PAIRED
Design description:
Library name:
Insert Size: 150
Library Construction protocol:
INDA Experiment Accession: INRX017933
INDA Run Accession: INRR017933
INSDC Accession: ERX14519091
INSDC Run Accession: ERR15114401
File Details:
INDA Run Accession: INRR017933
INSDC Accession: ERX14519091
INSDC Run Accession: ERR15114401
File Details:
| S.No | File name | Size in bytes(Total) | Base Count |
|---|---|---|---|
| 1 | DFU-AN5_S588_L004_R1_001.fastq.gz | 247792424 | 679776150 |
| 2 | DFU-AN5_S588_L004_R2_001.fastq.gz | 245037658 | 679776150 |