Sample Info
1. Whole Genome Analysis of a Bacterial Isolate from the Gut Microbiota of C57BL6J Mice
- Title: Whole Genome Analysis of a Bacterial Isolate from the Gut Microbiota of C57BL6J Mice
- Description: The gut microbiota significantly influences host immunity and metabolism. This study focuses on the whole genome analysis of a bacterial isolate from the gut microbiota of C57BL6J mice. High throughput sequencing was performed to uncover its genetic architecture, metabolic capabilities, and potential roles in host-microbiota interactions. Functional annotation identified genes associated with nutrient metabolism and antimicrobial resistance. Insights from this study enhance our understanding of the functional contributions of gut microbiota to host health and provide a basis for exploring its therapeutic potential.
- Organism: Ligilactobacillus salivarius Common name:
- Centre Name: Dr. Tanmay Majumdar, Centre for Excellence in Vaccine Development, National Institute of Immunology
- INDA Sample Accession: INS0010333
- INSDC Accession: SRS23979035, SAMN46541214
- Tax ID: 1624
collection date : 17-06-2024
geographic location (country and/or sea): India
host health state: healthy
host scientific name: Mus musculus
isolate: C57BL6J
Experiment and Run details
1. Whole Genome Analysis of a Bacterial Isolate from the Gut Microbiota of C57BL6J Mice
Library Source: GENOMIC
Library Selection: PCR
Instrument model: Illumina NovaSeq X
Instrument model: WGS
Library layout: PAIRED
Design description:
Library name:
Insert Size: 296
Library Construction protocol:
Library Selection: PCR
Instrument model: Illumina NovaSeq X
Instrument model: WGS
Library layout: PAIRED
Design description:
Library name:
Insert Size: 296
Library Construction protocol:
INDA Experiment Accession: INRX010570
INDA Run Accession: INRR010570
INSDC Accession: SRX27566564
INSDC Run Accession: SRR32226458
File Details:
INDA Run Accession: INRR010570
INSDC Accession: SRX27566564
INSDC Run Accession: SRR32226458
File Details:
| S.No | File name | Size in bytes(Total) | Base Count |
|---|---|---|---|
| 1 | Bacterial_genomic_DNA_R2.fastq.gz | 176758814 | 366608370 |
| 2 | Bacterial_genomic_DNA_R1.fastq.gz | 177361934 | 366608370 |