A comprehensive record of the world's nucleotide sequencing information
Citations
2024
Jagannadham PTK, Anbalagan T, Balyan S, Satheesh V, Kamde SA, Kuthe JU, et al. Whole Genome Resequencing data of Four Indian Mandarin Genotypes: Extending Our Understanding of Citrus Genomics. Data in Brief [Internet]. 2024 Sep 1;110896. Available from: https://doi.org/10.1016/j.dib.2024.110896
Paritosh K, Rajarammohan S, Yadava SK, Sharma S, Verma R, Mathur S, Mukhopadhyay A, Gupta V, Pradhan AK, Kaur J, Pental D. A chromosome-scale assembly of Brassica carinata (BBCC) accession HC20 containing resistance to multiple pathogens and an early generation assessment of introgressions into B. juncea (AABB). Plant J. 2024 May 9. doi: 10.1111/tpj.16794. PMID: 38722594.
Ruperao P, Bajaj P, Yadav R, Angamuthu M, Subramani R, Rai V, Tiwari K, Rathore A, Singh K, Singh GP, Angadi UB, Mayes S, Rangan P. Double-digest restriction-associated DNA sequencing-based genotyping and its applications in sesame germplasm management. Plant Genome. 2024 Apr 17:e20447. doi: 10.1002/tpg2.20447. Epub ahead of print. PMID: 38628142.
Khairnar K, Tomar SS. COVID-19 genome surveillance: A geographical landscape and mutational mapping of SARS-CoV-2 variants in central India over two years. Virus Res. 2024 Jun;344:199365. doi: 10.1016/j.virusres.2024.199365. Epub 2024 Mar 29. PMID: 38527669; PMCID: PMC10998191.
Karyakarte RP, Das R, Rajmane MV, Dudhate S, Agarasen J, Pillai P, Chandankhede PM, Labhshetwar RS, Gadiyal Y, Kulkarni PP, Nizarudeen S, Yanamandra S, Taji N, Joshi S, Potdar V. Appearance and Prevalence of JN.1 SARS-CoV-2 Variant in India and Its Clinical Profile in the State of Maharashtra. Cureus. 2024 Mar 22;16(3):e56718. doi: 10.7759/cureus.56718. PMID: 38646375; PMCID: PMC11032724.
Tyagi S, Sadhu S, Sharma T, Paul A, Pandey M, Nain VK, Rathore DK, Chatterjee S, Awasthi A, Pandey AK. VapC12 ribonuclease toxin modulates host immune response during Mycobacterium tuberculosis infection. Front Immunol. 2024 Mar 7;15:1302163. doi: 10.3389/fimmu.2024.1302163. PMID: 38515752; PMCID: PMC10955575.
Garg KM, Dovih P, Chattopadhyay B. Hybrid de novo genome assembly of the sexually dimorphic Lady Amherst's pheasant. DNA Res. 2024 Feb 1;31(1):dsae001. doi: 10.1093/dnares/dsae001. PMID: 38168719; PMCID: PMC10799330.
Sharma P, Mahongnao S, Ahamad A, Gupta R, Goel A, Kumar N, Nanda S. 16S rRNA metagenomic profiling of red amaranth grown organically with different composts and soils. Appl Microbiol Biotechnol. 2024 Dec;108(1):129. doi: 10.1007/s00253-023-12982-7. Epub 2024 Jan 15. PMID: 38229333; PMCID: PMC10789846.
2023
Cecilia H Deng, Sushma Naithani, Sunita Kumari, Irene Cobo-Simon, Elsa H Quezada-Rodriguez, Maria Skrabisova, Nick Gladman, Melanie J Correll, Akeem Babatunde Sikiru, Olusola O Afuwape, Annarita Marrano, Ines Rebollo, Wentao Zhang, Sook Jung, On behalf of the Genotype-Phenotype Working Group, AgBioData. Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences. Database, Volume 2023, 2023, baad088. https://doi.org/10.1093/database/baad088
Oyeyemi BF, Kaur US, Paramraj A, Chintamani, Tandon R, Kumar A, Bhavesh NS. Microbiome analysis of saliva from oral squamous cell carcinoma (OSCC) patients and tobacco abusers with potential biomarkers for oral cancer screening. Heliyon. 2023 Nov 8;9(11):e21773. doi: 10.1016/j.heliyon.2023.e21773. PMID: 38034672; PMCID: PMC10685184.
Mehrotra T, Konar D, Pragasam AK, Kumar S, Jana P, Babele P, Paul D, Purohit A, Tanwar S, Bakshi S, Das S, Verma J, Talukdar D, Narendrakumar L, Kothidar A, Karmakar SP, Chaudhuri S, Pal S, Jain K, Srikanth CV, Sankar MJ, Atmakuri K, Agarwal R, Gaind R, Ballal M, Kammili N, Bhadra RK, Ramamurthy T, Nair GB, Das B. Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis. Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2305465120. doi: 10.1073/pnas.2305465120. Epub 2023 Aug 7. PMID: 37549252; PMCID: PMC10434301.
Singh S, Madhukar M, Dikhit MR, Ravidas VN, Pandey K, Sen A. Transcriptome Analysis of Dermal Fibroblasts Derived From Visceral Leishmaniasis and Post-Kala-Azar Dermal Leishmaniasis Patients Reveal Disease-Specific Gene Expression and Pathological Regulation. J Infect Dis. 2023 May 12;227(10):1132-1142. doi: 10.1093/infdis/jiad049. PMID: 36821723.
Mohapatra S, Ghosh D, Vivekanandan P, Chunchanur S, Venugopal S, Tak V, Panigrahy R, Chaudhuri S, Pundir S, Sharma T, Kocher D, Singh H, Gautam H, Sood S, Das BK, Kapil A, Kumar A, Kumari R, Kalaivani M, Rangaiah A, Salve HR, Malhotra S, Kant S, Hari P; Investigators of CAUTION-ED STUDY (Community-acquired UTI & Emerging Drug Resistance). Genome profiling of uropathogenic E. coli from strictly defined community-acquired UTI in paediatric, adult and elderly patients in India with their antibiotic-resistance profiles. Front Microbiol. 2023 May 9;14:1165165. doi: 10.3389/fmicb.2023.1165165. PMID: 37330042; PMCID: PMC10268468.
Garg KM, Chakraborty D, Singh S, Salim I. Genomic data reveal that haplotypes in Java sparrow species group (Lonchura spp.) originated from ancient hybridization events. Commun Biol. 2023 Feb 10;6(1):67. doi: 10.1038/s42003-023-04526-5. PMID: 36762178; PMCID: PMC9909014.
2022
Upadhyay P, Gupta M, Sra SK, Sharda R, Sharma S, Sardana VK, Akhatar J, Kaur G. Genome wide association studies for acid phosphatase activity at varying phosphorous levels in Brassica juncea L. Front Plant Sci. 2022 Dec 20;13:1056028. doi: 10.3389/fpls.2022.1056028. PMID: 36605963; PMCID: PMC9808407.
Gour P, Kansal S, Agarwal P, Mishra BS, Sharma D, Mathur S, Raghuvanshi S. Variety-specific transcript accumulation during reproductive stage in drought-stressed rice. Physiol Plant. 2022 Jan;174(1):e13585. doi: 10.1111/ppl.13585. Epub 2021 Oct 27. PMID: 34652858.
2021
Kansal S, Panwar V, Mutum RD, Raghuvanshi S. Investigations on Regulation of MicroRNAs in Rice Reveal [Ca2+]cyt Signal Transduction Regulated MicroRNAs. Front Plant Sci. 2021 Oct 18;12:720009. doi: 10.3389/fpls.2021.720009. PMID: 34733300; PMCID: PMC8558223.
