MS Study

Project uploaded by: Rajib
Project ID: IMP_100015
Title: Metabolite profiling of MNBM by LC-MS/MS
Project Description: Metabolite profiling of Mahonia napaulensis bark methanol extract (MNBM) of Nepal by LC-MS/MS
Research Area: Biological Sciences
Funding Source: ICGEB, New Delhi
Project Contributors: ICGEB, New Delhi and UGC, Nepal

Study uploaded by: Rajib
Study ID: IMS_100012
Title: LC-MS/MS analysis of chloroform fraction (MNSMC) of methanol extract of stem of M. napaulensis.
Summary: Metabolite profiling of most active chloroform fraction (MNSMC) by LC-MS/MS analysis Since chloroform fraction of methanol extract of M. napaulensis stem was the most active fraction, its metabolite profiling was done by LC-MS/MS analysis. The LC-MS/MS analysis identified 153 metabolites. The most abundant five metabolites are cetrimonium (36.82 %), berberine (11.14 %), (15Z)-9,12,13-Trihydroxy-15-octadecenoic acid (7.31 %), protopine (6.13%) and (5R,6S)-5-Hydroxy-4-methoxy-6-(2-phenylethyl)-5,6-dihydro-2H-pyran-2-one (3.31 %). The literature study through PubChem and Chemical Entities of Biological Interest (ChEBI) reported that the metabolites berberine (11.14 %), protopine (6.13%), luteolin (1.07%), apigenin (0.64%), menadione (0.29%), tangeretin (0.21%), matairesinol (0.16%), dioscin (0.15%), nobiletin (0.14%), (E)-dacarbazine (0.12%), salirasib (0.11%), NECA (0.03%), MTIC (0.02%), mitoxantrone (0.01%), hydroxytyrosol (0.01%), and betulin (0.01%) have anticancer activity.
Publication:
Release Date: Dec. 20, 2024
Study Type: Mass Spectrometry (MS)
Data Type: Untargeted
IEC/IBSC Approval Number :

Sr.No Sample ID Sample Name Organism Source Sample Preparation Protocol Sample Type Experimental Condition Time of treatment Variant/Variety Gender Age Replicates Storage Conditions Extraction Protocol Number of files per sample
1 IMSM_100841 M. napaulensis Stem Mahonia nepalensis Plant-stem The sample was dissolved in 200ul of 80% MeOH and mixed with a Vortexer. The samples were mixed for 5 min and centrifuged at 13,000 × g for 5 min to remove solid particles from the supernatant. 100ul supernatant was transferred into 150 μL glass insert in a 1.5 mL amber glass vial and analyzed by UHPLC-MS/MS. Plant Sample Chloroform fraction (MNSMC) of methanol extract of stem of Mahonia napaulensis NA M. napaulensis NA NA NA 4oC

The plant stem was cleaned and shade dried. The dried plant stem was ground into fine powder. The extraction was done by cold maceration process using methanol solvent in closed vessel for three days at room temperature. The extract was collected. This process was repeated three times consecutively. The extract was filtered using Whatman filter paper No. 1. The filtered extract was dried under reduced pressure at room temperature below 40oC using rotary evaporator (BIOBASE RE-2000B Rotary Evaporator, China) and then, by using freeze dryer or lyophilizer. Then, the extract was stored in closed vials at 4oC for further analysis.

2 IMSM_100842 M. napaulensis Stem Mahonia nepalensis Plant-stem The sample was dissolved in 200ul of 80% MeOH and mixed with a Vortexer. The samples were mixed for 5 min and centrifuged at 13,000 × g for 5 min to remove solid particles from the supernatant. 100ul supernatant was transferred into 150 μL glass insert in a 1.5 mL amber glass vial and analyzed by UHPLC-MS/MS. Plant Sample (02) Chloroform fraction (MNSMC) of methanol extract of stem of Mahonia napaulensis NA M. napaulensis NA NA NA 4oC

The plant stem was cleaned and shade dried. The dried plant stem was ground into fine powder. The extraction was done by cold maceration process using methanol solvent in closed vessel for three days at room temperature. The extract was collected. This process was repeated three times consecutively. The extract was filtered using Whatman filter paper No. 1. The filtered extract was dried under reduced pressure at room temperature below 40oC using rotary evaporator (BIOBASE RE-2000B Rotary Evaporator, China) and then, by using freeze dryer or lyophilizer. Then, the extract was stored in closed vials at 4oC for further analysis.

Sr.No MS Exp ID Sample Name/ID Mass Spectrometer Type MS Instrument Name MS Instrument type MS Ionization Method Ion Mode/Scan Polarity Data Transformation (Software/s Used)
1 IME_100490 M. napaulensis Stem / IMSM_100841 LCMS (Liquid Chromatography- Mass Spectrometry) Thermo Q Exactive Plus Orbitarp|MS_1002634 Orbitrap Others Positive Compound Discoverer
2 IME_100491 M. napaulensis Stem / IMSM_100842 LCMS (Liquid Chromatography- Mass Spectrometry) Thermo Q Exactive Plus Orbitarp|MS_1002634 Orbitrap Others Negative Compound Discoverer

Sr.No First name Last name Email Organization Designation
1 Rajib Kumar Shrestha shrestharajib2005@ku.edu.np Kathmandu University, Nepal scientist

Sr.No ftprun ID MS Exp ID MS Data Files
1 IMR_101089 IME_100490 Mahonia_napaulensis_Stem_P.raw
2 IMR_101090 IME_100491 Mahonia_napaulensis_Stem_N.raw