MS Study

Project uploaded by: Rajib
Project ID: IMP_100015
Title: Metabolite profiling of MNBM by LC-MS/MS
Project Description: Metabolite profiling of Mahonia napaulensis bark methanol extract (MNBM) of Nepal by LC-MS/MS
Research Area: Biological Sciences
Funding Source: ICGEB, New Delhi
Project Contributors: ICGEB, New Delhi and UGC, Nepal

Study uploaded by: Rajib
Study ID: IMS_100011
Title: Metabolite profiling of MNBM by LC-MS/MS
Summary: The liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis was performed in VProteomics Laboratory, New Delhi, India. The metabolite profiling of methanol extract of bark of M. napaulensis (MNBM) was done by LC-MS/MS analysis and it identified 507 compounds. The chemical contents, retention time and area percentage of most abundant 59 metabolites are sorted according to maximum to minimum abundance order. The most abundant five metabolites are dihydroberberine (34.25%), ethylmorphine (8.91%), 2-(Methylthiomethyl)-3-phenylacrylaldehyde (8.57%), ochotensine (7.29%) and d-berbamine (6.56%). The literature study through PubChem and Chemical Entities of Biological Interest (ChEBI) reported that the metabolites dihydroberberine (34.25%), d-berbamine (6.56 %), (S)-glaucine (1.02%), protopine (0.54%), grosheimin (0.36%), mycophenolic acid (0.18%), 5-O-methylembelin (0.14%), berberine (0.12%), (-)-(S)-equol (0.11%), alpha-linolenic acid (0.09%), polidocanol (0.08%), juglone (0.07%), lapachol (0.05%), solasodine (0.05%), podophyllotoxin (0.05%), tandutinib (0.04%), mitoxantrone (0.03%), methyl 3-indolylacetate (0.03%), eugenol (0.02%), apaziquone (0.02%) and hymecromone (0.01%) have anticancer activity.
Publication: http://doi.org/10.1186/s12906-025-04806-0
Release Date: Dec. 20, 2024
Study Type: Mass Spectrometry (MS)
Data Type: Untargeted
IEC/IBSC Approval Number :

Sr.No Sample ID Sample Name Organism Source Sample Preparation Protocol Sample Type Experimental Condition Time of treatment Variant/Variety Gender Age Replicates Storage Conditions Extraction Protocol Number of files per sample
1 IMSM_100835 M. napaulensis Bark Mahonia nepalensis Plant-stem The extracted metabolites was dissolved in 200ul of 80% MeOH and mixed with a Vortexer. The samples were mixed for 5 min and centrifuged at 13,000 × g for 5 min to remove solid particles from the supernatant. 100ul supernatant was transferred into 150 μL glass insert in a 1.5 mL amber glass vial and analyzed by UHPLC-MS/MS. Plant Sample Methanol Extract of bark of M. napaulensis NA M. napaulensis NA NA NA 4oC

The plant bark was cleaned and shade dried. The dried plant bark was ground into fine powder. The extraction was done by cold maceration process using methanol solvent in closed vessel for three days at room temperature. The extract was collected. This process was repeated three times consecutively. The extract was filtered using Whatman filter paper No. 1. The filtered extract was dried under reduced pressure at room temperature below 40oC using rotary evaporator (BIOBASE RE-2000B Rotary Evaporator, China) and then, by using freeze dryer or lyophilizer. Then, the extract was stored in closed vials at 4oC for further analysis.

2 IMSM_100840 M. napaulensis Bark Mahonia nepalensis Plant-stem The extracted metabolites was dissolved in 200ul of 80% MeOH and mixed with a Vortexer. The samples were mixed for 5 min and centrifuged at 13,000 × g for 5 min to remove solid particles from the supernatant. 100ul supernatant was transferred into 150 μL glass insert in a 1.5 mL amber glass vial and analyzed by UHPLC-MS/MS. Plant Sample (02) Methanol Extract of Bark of M. napaulensis NA M. napaulensis NA NA NA 4oC

The plant bark was cleaned and shade dried. The dried plant bark was ground into fine powder. The extraction was done by cold maceration process using methanol solvent in closed vessel for three days at room temperature. The extract was collected. This process was repeated three times consecutively. The extract was filtered using Whatman filter paper No. 1. The filtered extract was dried under reduced pressure at room temperature below 40oC using rotary evaporator (BIOBASE RE-2000B Rotary Evaporator, China) and then, by using freeze dryer or lyophilizer. Then, the extract was stored in closed vials at 4oC for further analysis.

Sr.No MS Exp ID Sample Name/ID Mass Spectrometer Type MS Instrument Name MS Instrument type MS Ionization Method Ion Mode/Scan Polarity Data Transformation (Software/s Used)
1 IME_100488 M. napaulensis Bark / IMSM_100835 Thermo Exploris 240D Others|IMDA_MS_100014 Orbitrap Others Positive Compound Discoverer
2 IME_100489 M. napaulensis Bark / IMSM_100840 Thermo Exploris 240D Others|IMDA_MS_100014 Orbitrap Others Negative Compound Discoverer

Sr.No First name Last name Email Organization Designation
1 Rajib Kumar Shrestha shrestharajib2005@ku.edu.np Kathmandu University, Nepal research_scholar

Sr.No ftprun ID MS Exp ID MS Data Files
1 IMR_101087 IME_100488 M_napaulensis_Bark_P.raw
2 IMR_101088 IME_100489 M_napaulensis_Bark_N.raw